CRISPRone

CRISPRone report for GCA_901004875.1_7614_7_33

♦ Seq 1: CAAJWG010000005.1 Clostridioides difficile strain clo35 genome assembly, contig: ERS080200SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 231071 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 120645-120806 bp Zoom in on locus 1 x3 CRISPR array Location: 120645-120806 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 120645-120806 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 120645-120806 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWG010000001.1 Clostridioides difficile strain clo35 genome assembly, contig: ERS080200SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 529595 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252645-263782 bp 2 Locus 2: 485908-486001 bp Zoom in on locus 1 x25 Zoom in on locus 2 x2 CRISPR array Location: 252645-254244 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 252645-254244 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 254428-254694 bp Gene: cd09722:cas1 Type: universal Location: 254697-255677 bp Gene: pfam01930:cas4 Type: Type-I Location: 255680-256198 bp Gene: COG1203:cas3 Type: Type-I Location: 256246-258567 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258578-259279 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259281-260195 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260197-262047 bp Gene: pfam01881:cas6 Type: other Location: 262053-262847 bp Gene: pfam13280:WYL Type: other Location: 262868-263782 bp CRISPR array Location: 485908-486001 bp Num of repeats: 2 Spacers: s25-s25 CRISPR array Location: 485908-486001 bp Num of repeats: 2 Spacers: s25-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252645-254244 bp]: array | spacers
           [Locus range 485908-486001 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWG010000004.1 Clostridioides difficile strain clo35 genome assembly, contig: ERS080200SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 246964 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17866-18623 bp 2 Locus 2: 109351-114216 bp Zoom in on locus 1 x12 Zoom in on locus 2 x7 x4 x13 CRISPR array Location: 17866-18623 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17866-18623 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 109351-109775 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 109351-109775 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 111379-111603 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 111379-111603 bp Num of repeats: 4 Spacers: s18-s20 CRISPR array Location: 113396-114216 bp Num of repeats: 13 Spacers: s21-s32 CRISPR array Location: 113396-114216 bp Num of repeats: 13 Spacers: s21-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17866-18623 bp]: array | spacers
           [Locus range 109351-109775 bp]: array | spacers
           [Locus range 111379-111603 bp]: array | spacers
           [Locus range 113396-114216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWG010000019.1 Clostridioides difficile strain clo35 genome assembly, contig: ERS080200SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 68226 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3473-4623 bp Zoom in on locus 1 x18 CRISPR array Location: 3473-4623 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3473-4623 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3473-4623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWG010000002.1 Clostridioides difficile strain clo35 genome assembly, contig: ERS080200SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370196 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43828-44186 bp 2 Locus 2: 117468-125789 bp 3 Locus 3: 289061-289678 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 43828-44186 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 43828-44186 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117468-118577 bp Gene: unk Type: unknown Location: 119011-119187 bp Gene: pfam01881:cas6 Type: other Location: 119288-120025 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120030-121505 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121525-122541 bp Gene: cd09693:cas5 Type: Type-I Location: 122557-123354 bp Gene: cd09641:cas3HD Type: Type-I Location: 123381-125789 bp CRISPR array Location: 289061-289678 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289061-289678 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 43828-44186 bp]: array | spacers
           [Locus range 289061-289678 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWG010000007.1 Clostridioides difficile strain clo35 genome assembly, contig: ERS080200SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 215518 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90897-91455 bp Zoom in on locus 1 x9 CRISPR array Location: 90897-91455 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90897-91455 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90897-91455 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)