CRISPRone

CRISPRone report for GCA_901004885.1_7614_7_28

♦ Seq 1: CAAJWL010000021.1 Clostridioides difficile strain clo30 genome assembly, contig: ERS080195SCcontig000021, whole genome shotgun sequence

⇒Summary: seq-len = 76571 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-3329 bp Zoom in on locus 1 x27 CRISPR array Location: 1584-3329 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 1584-3329 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-3329 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWL010000001.1 Clostridioides difficile strain clo30 genome assembly, contig: ERS080195SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 324628 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45817-46829 bp 2 Locus 2: 84331-97371 bp Zoom in on locus 1 x16 Zoom in on locus 2 x55 CRISPR array Location: 45817-46829 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 45817-46829 bp Num of repeats: 16 Spacers: s1-s15 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84331-84708 bp Gene: cd09718:cas1 Type: universal Location: 84720-86375 bp CRISPR array Location: 93777-97371 bp Num of repeats: 55 Spacers: s16-s69 CRISPR array Location: 93777-97371 bp Num of repeats: 55 Spacers: s16-s69 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45817-46829 bp]: array | spacers
           [Locus range 93777-97371 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWL010000004.1 Clostridioides difficile strain clo30 genome assembly, contig: ERS080195SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 258494 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97932-108885 bp 2 Locus 2: 161488-169815 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 97932-98438 bp Gene: unk Type: unknown Location: 98597-99265 bp Gene: unk Type: unknown Location: 99678-100184 bp Gene: cd06127:DEDDh Type: Type-I Location: 100548-101585 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 108400-108885 bp Gene: cd09641:cas3HD Type: Type-I Location: 161488-163896 bp Gene: cd09693:cas5 Type: Type-I Location: 163923-164720 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 164736-165749 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 165768-167234 bp Gene: pfam01881:cas6 Type: other Location: 167239-167976 bp Gene: unk Type: unknown Location: 168077-168253 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 168706-169815 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWL010000003.1 Clostridioides difficile strain clo30 genome assembly, contig: ERS080195SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 295449 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190610-191368 bp Zoom in on locus 1 x12 CRISPR array Location: 190610-191368 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 190610-191368 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190610-191368 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWL010000008.1 Clostridioides difficile strain clo30 genome assembly, contig: ERS080195SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 147130 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 125741-137315 bp Zoom in on locus 1 x31 CRISPR array Location: 125741-127738 bp Num of repeats: 31 Spacers: s1-s30 CRISPR array Location: 125741-127738 bp Num of repeats: 31 Spacers: s1-s30 Gene: cd09725:cas2 Type: universal Location: 127922-128188 bp Gene: cd09722:cas1 Type: universal Location: 128191-129171 bp Gene: pfam01930:cas4 Type: Type-I Location: 129174-129692 bp Gene: COG1203:cas3 Type: Type-I Location: 129740-132061 bp Gene: cd09693:cas5 Type: Type-I Location: 132072-132773 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 132775-133689 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 133691-135541 bp Gene: pfam01881:cas6 Type: other Location: 135547-136284 bp Gene: pfam13280:WYL Type: other Location: 136362-137315 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 125741-127738 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWL010000011.1 Clostridioides difficile strain clo30 genome assembly, contig: ERS080195SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 141303 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62249-73902 bp Zoom in on locus 1 x40 Gene: cd09725:cas2 Type: universal Location: 62249-62539 bp Gene: cd09722:cas1 Type: universal Location: 62750-63757 bp Gene: pfam01930:cas4 Type: Type-I Location: 63783-64277 bp CRISPR array Location: 64362-66960 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 64362-66960 bp Num of repeats: 40 Spacers: s1-s39 Gene: unk Type: unknown Location: 64985-65113 bp Gene: cd09641:cas3HD Type: Type-I Location: 67150-69708 bp Gene: cd09693:cas5 Type: Type-I Location: 69732-70472 bp Gene: pfam05107:cas7b Type: Type-I Location: 70474-71463 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 71456-73195 bp Gene: cd09652:cas6 Type: other Location: 73207-73902 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64362-66960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)