CRISPRone

CRISPRone report for GCA_901004905.1_7614_7_36

♦ Seq 1: CAAJWM010000017.1 Clostridioides difficile strain clo38 genome assembly, contig: ERS080203SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 99203 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44961-45587 bp 2 Locus 2: 87207-87302 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 44961-45587 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 44961-45587 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 87207-87302 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 87207-87302 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44961-45587 bp]: array | spacers
           [Locus range 87207-87302 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWM010000004.1 Clostridioides difficile strain clo38 genome assembly, contig: ERS080203SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 236404 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183446-191321 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183446-184555 bp Gene: pfam01881:cas6 Type: other Location: 184814-185551 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185556-187031 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 187051-188064 bp Gene: cd09693:cas5 Type: Type-I Location: 188080-188886 bp Gene: cd09641:cas3HD Type: Type-I Location: 188913-191321 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWM010000001.1 Clostridioides difficile strain clo38 genome assembly, contig: ERS080203SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 309290 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112311-113135 bp Zoom in on locus 1 x13 CRISPR array Location: 112311-113135 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112311-113135 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112311-113135 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWM010000010.1 Clostridioides difficile strain clo38 genome assembly, contig: ERS080203SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 141064 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16529-26838 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16529-17416 bp Gene: pfam01881:cas6 Type: other Location: 17494-18231 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18237-20114 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20116-21030 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 21032-21733 bp Gene: COG1203:cas3 Type: Type-I Location: 21744-24065 bp Gene: pfam01930:cas4 Type: Type-I Location: 24080-24631 bp Gene: cd09722:cas1 Type: universal Location: 24634-25614 bp Gene: cd09725:cas2 Type: universal Location: 25617-25883 bp CRISPR array Location: 26067-27685 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26067-27685 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26216-26383 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26605-26838 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26067-27685 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWM010000013.1 Clostridioides difficile strain clo38 genome assembly, contig: ERS080203SCcontig000013, whole genome shotgun sequence

⇒Summary: seq-len = 125841 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49614-56147 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 49614-50261 bp Gene: pfam01881:cas6 Type: other Location: 50252-51016 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 51018-52184 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 52205-53275 bp Gene: COG1203:cas3 Type: Type-I Location: 53286-55271 bp CRISPR array Location: 55524-56147 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 55524-56147 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 55524-56147 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWM010000002.1 Clostridioides difficile strain clo38 genome assembly, contig: ERS080203SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 289262 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 944-1902 bp 2 Locus 2: 210290-210977 bp Zoom in on locus 1 x15 Zoom in on locus 2 x11 CRISPR array Location: 944-1902 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 944-1902 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 210290-210977 bp Num of repeats: 11 Spacers: s15-s24 CRISPR array Location: 210290-210977 bp Num of repeats: 11 Spacers: s15-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 944-1902 bp]: array | spacers
           [Locus range 210290-210977 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWM010000008.1 Clostridioides difficile strain clo38 genome assembly, contig: ERS080203SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 149076 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30692-30986 bp 2 Locus 2: 123369-125880 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30692-30986 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30692-30986 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123369-123726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123369-123726 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125590-125880 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125590-125880 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30692-30986 bp]: array | spacers
           [Locus range 123369-123726 bp]: array | spacers
           [Locus range 125590-125880 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)