CRISPRone

CRISPRone report for GCA_901004935.1_7614_7_41

♦ Seq 1: CAAJWN010000027.1 Clostridioides difficile strain lsh01 genome assembly, contig: ERS080208SCcontig000027, whole genome shotgun sequence

⇒Summary: seq-len = 20554 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10835-13700 bp Zoom in on locus 1 x9 x10 CRISPR array Location: 10835-11385 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10835-11385 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 13069-13700 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 13069-13700 bp Num of repeats: 10 Spacers: s9-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10835-11385 bp]: array | spacers
           [Locus range 13069-13700 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWN010000005.1 Clostridioides difficile strain lsh01 genome assembly, contig: ERS080208SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 289118 bp; # of CRISPR array = 2; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3273 bp 2 Locus 2: 79173-79332 bp 3 Locus 3: 287438-288324 bp Zoom in on locus 1 Zoom in on locus 2 x3 Zoom in on locus 3 x14 Gene: cas14:cas14 Type: Type-V Location: 1-378 bp Gene: COG2378:WYL Type: other Location: 1017-1928 bp Gene: unk Type: unknown Location: 2039-2506 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 2674-3273 bp CRISPR array Location: 79173-79332 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 79173-79332 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 287438-288324 bp Num of repeats: 14 Spacers: s3-s15 CRISPR array Location: 287438-288324 bp Num of repeats: 14 Spacers: s3-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 79173-79332 bp]: array | spacers
           [Locus range 287438-288324 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWN010000003.1 Clostridioides difficile strain lsh01 genome assembly, contig: ERS080208SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 340525 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23928-24218 bp 2 Locus 2: 42293-42786 bp Zoom in on locus 1 x5 Zoom in on locus 2 x8 CRISPR array Location: 23928-24218 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23928-24218 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 42293-42786 bp Num of repeats: 8 Spacers: s5-s11 CRISPR array Location: 42293-42786 bp Num of repeats: 8 Spacers: s5-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23928-24218 bp]: array | spacers
           [Locus range 42293-42786 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWN010000006.1 Clostridioides difficile strain lsh01 genome assembly, contig: ERS080208SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 197535 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49293-49522 bp Zoom in on locus 1 x4 CRISPR array Location: 49293-49522 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 49293-49522 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 49293-49522 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWN010000001.1 Clostridioides difficile strain lsh01 genome assembly, contig: ERS080208SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 479763 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159946-167812 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 159946-162354 bp Gene: cd09693:cas5 Type: Type-I Location: 162381-163178 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 163194-164207 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 164227-165702 bp Gene: pfam01881:cas6 Type: other Location: 165707-166444 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166703-167812 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWN010000007.1 Clostridioides difficile strain lsh01 genome assembly, contig: ERS080208SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 198624 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114444-115859 bp Zoom in on locus 1 x22 CRISPR array Location: 114444-115859 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 114444-115859 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114444-115859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWN010000012.1 Clostridioides difficile strain lsh01 genome assembly, contig: ERS080208SCcontig000012, whole genome shotgun sequence

⇒Summary: seq-len = 128511 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97257-97550 bp Zoom in on locus 1 x5 CRISPR array Location: 97257-97550 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 97257-97550 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 97257-97550 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)