CRISPRone

CRISPRone report for GCA_901004955.1_7614_7_42

♦ Seq 1: CAAJWQ010000007.1 Clostridioides difficile strain lsh04 genome assembly, contig: ERS080209SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 202257 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110274-110434 bp Zoom in on locus 1 x3 CRISPR array Location: 110274-110434 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110274-110434 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110274-110434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWQ010000001.1 Clostridioides difficile strain lsh04 genome assembly, contig: ERS080209SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 585977 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44112-44470 bp 2 Locus 2: 117752-126073 bp 3 Locus 3: 289344-289896 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x9 CRISPR array Location: 44112-44470 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44112-44470 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117752-118861 bp Gene: unk Type: unknown Location: 119295-119471 bp Gene: pfam01881:cas6 Type: other Location: 119572-120309 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120314-121789 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121809-122825 bp Gene: cd09693:cas5 Type: Type-I Location: 122841-123638 bp Gene: cd09641:cas3HD Type: Type-I Location: 123665-126073 bp CRISPR array Location: 289344-289896 bp Num of repeats: 9 Spacers: s6-s13 CRISPR array Location: 289344-289896 bp Num of repeats: 9 Spacers: s6-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44112-44470 bp]: array | spacers
           [Locus range 289344-289896 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWQ010000002.1 Clostridioides difficile strain lsh04 genome assembly, contig: ERS080209SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 506027 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19974-20068 bp 2 Locus 2: 242381-253360 bp Zoom in on locus 1 x2 Zoom in on locus 2 x23 CRISPR array Location: 19974-20068 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 19974-20068 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 242381-243268 bp Gene: pfam01881:cas6 Type: other Location: 243346-244083 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 244089-245939 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 245941-246855 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 246857-247558 bp Gene: COG1203:cas3 Type: Type-I Location: 247569-249890 bp Gene: pfam01930:cas4 Type: Type-I Location: 249905-250456 bp Gene: cd09722:cas1 Type: universal Location: 250459-251439 bp Gene: cd09725:cas2 Type: universal Location: 251442-251708 bp CRISPR array Location: 251892-253360 bp Num of repeats: 23 Spacers: s2-s23 CRISPR array Location: 251892-253360 bp Num of repeats: 23 Spacers: s2-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19974-20068 bp]: array | spacers
           [Locus range 251892-253360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWQ010000015.1 Clostridioides difficile strain lsh04 genome assembly, contig: ERS080209SCcontig000015, whole genome shotgun sequence

⇒Summary: seq-len = 108453 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17711-18468 bp Zoom in on locus 1 x12 CRISPR array Location: 17711-18468 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17711-18468 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17711-18468 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWQ010000020.1 Clostridioides difficile strain lsh04 genome assembly, contig: ERS080209SCcontig000020, whole genome shotgun sequence

⇒Summary: seq-len = 68241 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63606-64755 bp Zoom in on locus 1 x18 CRISPR array Location: 63606-64755 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63606-64755 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63606-64755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWQ010000005.1 Clostridioides difficile strain lsh04 genome assembly, contig: ERS080209SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 215721 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90942-91567 bp Zoom in on locus 1 x10 CRISPR array Location: 90942-91567 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 90942-91567 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90942-91567 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWQ010000026.1 Clostridioides difficile strain lsh04 genome assembly, contig: ERS080209SCcontig000026, whole genome shotgun sequence

⇒Summary: seq-len = 24878 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1473-2551 bp Zoom in on locus 1 x17 CRISPR array Location: 1473-2551 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 1473-2551 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1473-2551 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)