CRISPRone

CRISPRone report for GCA_901004965.1_7614_7_34

♦ Seq 1: CAAJWR010000002.1 Clostridioides difficile strain clo36 genome assembly, contig: ERS080201SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 406045 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 132604-137534 bp 2 Locus 2: 281491-281982 bp Zoom in on locus 1 x14 x4 x7 Zoom in on locus 2 x8 CRISPR array Location: 132604-133489 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 132604-133489 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 135283-135506 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 135283-135506 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 137111-137534 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 137111-137534 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 281491-281982 bp Num of repeats: 8 Spacers: s23-s29 CRISPR array Location: 281491-281982 bp Num of repeats: 8 Spacers: s23-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 132604-133489 bp]: array | spacers
           [Locus range 135283-135506 bp]: array | spacers
           [Locus range 137111-137534 bp]: array | spacers
           [Locus range 281491-281982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWR010000022.1 Clostridioides difficile strain clo36 genome assembly, contig: ERS080201SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 29124 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10503-11259 bp Zoom in on locus 1 x12 CRISPR array Location: 10503-11259 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 10503-11259 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10503-11259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWR010000017.1 Clostridioides difficile strain clo36 genome assembly, contig: ERS080201SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 68237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63616-64765 bp Zoom in on locus 1 x18 CRISPR array Location: 63616-64765 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 63616-64765 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63616-64765 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWR010000005.1 Clostridioides difficile strain clo36 genome assembly, contig: ERS080201SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 277007 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 86034-87182 bp Zoom in on locus 1 x18 CRISPR array Location: 86034-87182 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 86034-87182 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 86034-87182 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWR010000006.1 Clostridioides difficile strain clo36 genome assembly, contig: ERS080201SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 253715 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110251-110411 bp 2 Locus 2: 131252-131605 bp Zoom in on locus 1 x3 Zoom in on locus 2 x6 CRISPR array Location: 110251-110411 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 110251-110411 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 131252-131605 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 131252-131605 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 110251-110411 bp]: array | spacers
           [Locus range 131252-131605 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWR010000003.1 Clostridioides difficile strain clo36 genome assembly, contig: ERS080201SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 370753 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289618-290235 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289618-290235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWR010000001.1 Clostridioides difficile strain clo36 genome assembly, contig: ERS080201SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 530592 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44547-44641 bp 2 Locus 2: 266850-277961 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44547-44641 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44547-44641 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 266850-267737 bp Gene: pfam01881:cas6 Type: other Location: 267815-268552 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268558-270408 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270410-271324 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271326-272027 bp Gene: COG1203:cas3 Type: Type-I Location: 272038-274359 bp Gene: pfam01930:cas4 Type: Type-I Location: 274374-274925 bp Gene: cd09722:cas1 Type: universal Location: 274928-275908 bp Gene: cd09725:cas2 Type: universal Location: 275911-276177 bp CRISPR array Location: 276361-277961 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276361-277961 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44547-44641 bp]: array | spacers
           [Locus range 276361-277961 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)