CRISPRone

CRISPRone report for GCA_901004985.1_7614_7_5

♦ Seq 1: CAAJWW010000001.1 Clostridioides difficile strain clo05 genome assembly, contig: ERS080172SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 529736 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43588-43682 bp 2 Locus 2: 265894-277005 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 43588-43682 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 43588-43682 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 265894-266781 bp Gene: pfam01881:cas6 Type: other Location: 266859-267596 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 267602-269452 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 269454-270368 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 270370-271071 bp Gene: COG1203:cas3 Type: Type-I Location: 271082-273403 bp Gene: pfam01930:cas4 Type: Type-I Location: 273418-273969 bp Gene: cd09722:cas1 Type: universal Location: 273972-274952 bp Gene: cd09725:cas2 Type: universal Location: 274955-275221 bp CRISPR array Location: 275405-277005 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 275405-277005 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 43588-43682 bp]: array | spacers
           [Locus range 275405-277005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWW010000002.1 Clostridioides difficile strain clo05 genome assembly, contig: ERS080172SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 370238 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80536-81152 bp 2 Locus 2: 244424-252745 bp 3 Locus 3: 326028-326385 bp Zoom in on locus 1 x10 Zoom in on locus 2 Zoom in on locus 3 x6 CRISPR array Location: 80536-81152 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 80536-81152 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 244424-246832 bp Gene: cd09693:cas5 Type: Type-I Location: 246859-247656 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 247672-248688 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 248708-250183 bp Gene: pfam01881:cas6 Type: other Location: 250188-250925 bp Gene: unk Type: unknown Location: 251026-251202 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 251636-252745 bp CRISPR array Location: 326028-326385 bp Num of repeats: 6 Spacers: s10-s14 CRISPR array Location: 326028-326385 bp Num of repeats: 6 Spacers: s10-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 80536-81152 bp]: array | spacers
           [Locus range 326028-326385 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWW010000032.1 Clostridioides difficile strain clo05 genome assembly, contig: ERS080172SCcontig000032, whole genome shotgun sequence

⇒Summary: seq-len = 13988 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3495-8425 bp Zoom in on locus 1 x14 x4 x7 CRISPR array Location: 3495-4380 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 3495-4380 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 6174-6397 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 6174-6397 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 8002-8425 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 8002-8425 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3495-4380 bp]: array | spacers
           [Locus range 6174-6397 bp]: array | spacers
           [Locus range 8002-8425 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWW010000019.1 Clostridioides difficile strain clo05 genome assembly, contig: ERS080172SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 63859 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45238-45994 bp Zoom in on locus 1 x12 CRISPR array Location: 45238-45994 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 45238-45994 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45238-45994 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWW010000008.1 Clostridioides difficile strain clo05 genome assembly, contig: ERS080172SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 204198 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93740-93901 bp Zoom in on locus 1 x3 CRISPR array Location: 93740-93901 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93740-93901 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93740-93901 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWW010000006.1 Clostridioides difficile strain clo05 genome assembly, contig: ERS080172SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 215635 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90912-91470 bp Zoom in on locus 1 x9 CRISPR array Location: 90912-91470 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 90912-91470 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90912-91470 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWW010000018.1 Clostridioides difficile strain clo05 genome assembly, contig: ERS080172SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 68226 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3473-4623 bp Zoom in on locus 1 x18 CRISPR array Location: 3473-4623 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3473-4623 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3473-4623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)