CRISPRone

CRISPRone report for GCA_901004995.1_7614_7_7

♦ Seq 1: CAAJWX010000005.1 Clostridioides difficile strain clo07 genome assembly, contig: ERS080174SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 149262 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 225-4936 bp Zoom in on locus 1 x40 CRISPR array Location: 225-2824 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 225-2824 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 2908-3402 bp Gene: cd09722:cas1 Type: universal Location: 3428-4435 bp Gene: cd09725:cas2 Type: universal Location: 4646-4936 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 225-2824 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWX010000034.1 Clostridioides difficile strain clo07 genome assembly, contig: ERS080174SCcontig000034, whole genome shotgun sequence

⇒Summary: seq-len = 51010 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38156-50467 bp Zoom in on locus 1 x44 Gene: COG0640:csa3 Type: Subtype-I-A Location: 38156-38533 bp Gene: cd09718:cas1 Type: universal Location: 38545-40200 bp CRISPR array Location: 47602-50467 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 47602-50467 bp Num of repeats: 44 Spacers: s1-s43 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 47602-50467 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWX010000001.1 Clostridioides difficile strain clo07 genome assembly, contig: ERS080174SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 226706 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36484-37110 bp Zoom in on locus 1 x10 CRISPR array Location: 36484-37110 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 36484-37110 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 36484-37110 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWX010000072.1 Clostridioides difficile strain clo07 genome assembly, contig: ERS080174SCcontig000072, whole genome shotgun sequence

⇒Summary: seq-len = 3507 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 776-1924 bp Zoom in on locus 1 x18 CRISPR array Location: 776-1924 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 776-1924 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 776-1924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWX010000077.1 Clostridioides difficile strain clo07 genome assembly, contig: ERS080174SCcontig000077, whole genome shotgun sequence

⇒Summary: seq-len = 2939 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-2548 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 1-297 bp Gene: cd09693:cas5 Type: Type-I Location: 321-1061 bp Gene: pfam05107:cas7b Type: Type-I Location: 1063-2052 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2045-2548 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWX010000070.1 Clostridioides difficile strain clo07 genome assembly, contig: ERS080174SCcontig000070, whole genome shotgun sequence

⇒Summary: seq-len = 4123 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1857-2671 bp Zoom in on locus 1 x13 CRISPR array Location: 1857-2671 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1857-2671 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1857-2671 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWX010000084.1 Clostridioides difficile strain clo07 genome assembly, contig: ERS080174SCcontig000084, whole genome shotgun sequence

⇒Summary: seq-len = 1682 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1680 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 2-697 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 709-1680 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJWX010000007.1 Clostridioides difficile strain clo07 genome assembly, contig: ERS080174SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 131065 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 109552-121250 bp Zoom in on locus 1 x33 CRISPR array Location: 109552-111673 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 109552-111673 bp Num of repeats: 33 Spacers: s1-s32 Gene: cd09725:cas2 Type: universal Location: 111857-112123 bp Gene: cd09722:cas1 Type: universal Location: 112126-113106 bp Gene: pfam01930:cas4 Type: Type-I Location: 113109-113627 bp Gene: COG1203:cas3 Type: Type-I Location: 113675-115996 bp Gene: cd09693:cas5 Type: Type-I Location: 116007-116708 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 116710-117624 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 117626-119476 bp Gene: pfam01881:cas6 Type: other Location: 119482-120219 bp Gene: pfam13280:WYL Type: other Location: 120297-121250 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 109552-111673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CAAJWX010000003.1 Clostridioides difficile strain clo07 genome assembly, contig: ERS080174SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 167038 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9413-15901 bp 2 Locus 2: 68504-79457 bp Zoom in on locus 1 Zoom in on locus 2 Gene: pfam01881:cas6 Type: other Location: 9413-10150 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 10155-11621 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 11640-12653 bp Gene: cd09693:cas5 Type: Type-I Location: 12669-13466 bp Gene: cd09641:cas3HD Type: Type-I Location: 13493-15901 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 68504-68989 bp Gene: cd06127:DEDDh Type: Type-I Location: 75804-76841 bp Gene: unk Type: unknown Location: 77205-77711 bp Gene: unk Type: unknown Location: 78124-78792 bp Gene: cd06127:DEDDh Type: Type-I Location: 78951-79457 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)