CRISPRone

CRISPRone report for GCA_901005005.1_7614_7_4

♦ Seq 1: CAAJWV010000019.1 Clostridioides difficile strain clo04 genome assembly, contig: ERS080171SCcontig000019, whole genome shotgun sequence

⇒Summary: seq-len = 68643 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3842-4992 bp Zoom in on locus 1 x18 CRISPR array Location: 3842-4992 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3842-4992 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3842-4992 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWV010000017.1 Clostridioides difficile strain clo04 genome assembly, contig: ERS080171SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 96700 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17949-18706 bp Zoom in on locus 1 x12 CRISPR array Location: 17949-18706 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 17949-18706 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17949-18706 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWV010000008.1 Clostridioides difficile strain clo04 genome assembly, contig: ERS080171SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 216649 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91560-92118 bp Zoom in on locus 1 x9 CRISPR array Location: 91560-92118 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 91560-92118 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91560-92118 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWV010000002.1 Clostridioides difficile strain clo04 genome assembly, contig: ERS080171SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 404699 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 93301-93462 bp Zoom in on locus 1 x3 CRISPR array Location: 93301-93462 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 93301-93462 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 93301-93462 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWV010000010.1 Clostridioides difficile strain clo04 genome assembly, contig: ERS080171SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 146238 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 133964-138894 bp Zoom in on locus 1 x14 x4 x7 CRISPR array Location: 133964-134849 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 133964-134849 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 136643-136866 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 136643-136866 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 138471-138894 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 138471-138894 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 133964-134849 bp]: array | spacers
           [Locus range 136643-136866 bp]: array | spacers
           [Locus range 138471-138894 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWV010000001.1 Clostridioides difficile strain clo04 genome assembly, contig: ERS080171SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 530836 bp; # of CRISPR array = 2; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44743-44837 bp 2 Locus 2: 267076-278187 bp Zoom in on locus 1 x2 Zoom in on locus 2 x25 CRISPR array Location: 44743-44837 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 44743-44837 bp Num of repeats: 2 Spacers: s1-s1 Gene: pfam13280:WYL Type: other Location: 267076-267963 bp Gene: pfam01881:cas6 Type: other Location: 268041-268778 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 268784-270634 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 270636-271550 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 271552-272253 bp Gene: COG1203:cas3 Type: Type-I Location: 272264-274585 bp Gene: pfam01930:cas4 Type: Type-I Location: 274600-275151 bp Gene: cd09722:cas1 Type: universal Location: 275154-276134 bp Gene: cd09725:cas2 Type: universal Location: 276137-276403 bp CRISPR array Location: 276587-278187 bp Num of repeats: 25 Spacers: s2-s25 CRISPR array Location: 276587-278187 bp Num of repeats: 25 Spacers: s2-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44743-44837 bp]: array | spacers
           [Locus range 276587-278187 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWV010000003.1 Clostridioides difficile strain clo04 genome assembly, contig: ERS080171SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 370781 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44385-44743 bp 2 Locus 2: 118025-126346 bp 3 Locus 3: 289618-290235 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 x10 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44385-44743 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 118025-119134 bp Gene: unk Type: unknown Location: 119568-119744 bp Gene: pfam01881:cas6 Type: other Location: 119845-120582 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120587-122062 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122082-123098 bp Gene: cd09693:cas5 Type: Type-I Location: 123114-123911 bp Gene: cd09641:cas3HD Type: Type-I Location: 123938-126346 bp CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 289618-290235 bp Num of repeats: 10 Spacers: s6-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44385-44743 bp]: array | spacers
           [Locus range 289618-290235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)