CRISPRone

CRISPRone report for GCA_901005015.1_7614_7_6

♦ Seq 1: CAAJWU010000001.1 Clostridioides difficile strain clo06 genome assembly, contig: ERS080173SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 275807 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 227262-239572 bp Zoom in on locus 1 x44 CRISPR array Location: 227262-230126 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 227262-230126 bp Num of repeats: 44 Spacers: s1-s43 Gene: cd09718:cas1 Type: universal Location: 237528-239183 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239195-239572 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 227262-230126 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWU010000023.1 Clostridioides difficile strain clo06 genome assembly, contig: ERS080173SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 74684 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3960-14913 bp 2 Locus 2: 67516-74004 bp Zoom in on locus 1 Zoom in on locus 2 Gene: cd06127:DEDDh Type: Type-I Location: 3960-4466 bp Gene: unk Type: unknown Location: 4625-5293 bp Gene: unk Type: unknown Location: 5706-6212 bp Gene: cd06127:DEDDh Type: Type-I Location: 6576-7613 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 14428-14913 bp Gene: cd09641:cas3HD Type: Type-I Location: 67516-69924 bp Gene: cd09693:cas5 Type: Type-I Location: 69951-70748 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 70764-71777 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71796-73262 bp Gene: pfam01881:cas6 Type: other Location: 73267-74004 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWU010000005.1 Clostridioides difficile strain clo06 genome assembly, contig: ERS080173SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 134306 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-8567 bp Zoom in on locus 1 x33 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 1-492 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 494-1408 bp Gene: cd09693:cas5 Type: Type-I Location: 1410-2111 bp Gene: COG1203:cas3 Type: Type-I Location: 2122-4443 bp Gene: pfam01930:cas4 Type: Type-I Location: 4458-5009 bp Gene: cd09722:cas1 Type: universal Location: 5012-5992 bp Gene: cd09725:cas2 Type: universal Location: 5995-6261 bp CRISPR array Location: 6445-8567 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 6445-8567 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6445-8567 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWU010000002.1 Clostridioides difficile strain clo06 genome assembly, contig: ERS080173SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 217121 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190317-190944 bp Zoom in on locus 1 x10 CRISPR array Location: 190317-190944 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 190317-190944 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190317-190944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWU010000056.1 Clostridioides difficile strain clo06 genome assembly, contig: ERS080173SCcontig000056, whole genome shotgun sequence

⇒Summary: seq-len = 13040 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-13038 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 11590-13038 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWU010000024.1 Clostridioides difficile strain clo06 genome assembly, contig: ERS080173SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 73687 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 277-11930 bp Zoom in on locus 1 x40 Gene: cd09652:cas6 Type: other Location: 277-972 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 984-2723 bp Gene: pfam05107:cas7b Type: Type-I Location: 2716-3705 bp Gene: cd09693:cas5 Type: Type-I Location: 3707-4447 bp Gene: cd09641:cas3HD Type: Type-I Location: 4471-7029 bp CRISPR array Location: 7219-9818 bp Num of repeats: 40 Spacers: s1-s39 CRISPR array Location: 7219-9818 bp Num of repeats: 40 Spacers: s1-s39 Gene: pfam01930:cas4 Type: Type-I Location: 9902-10396 bp Gene: cd09722:cas1 Type: universal Location: 10422-11429 bp Gene: cd09725:cas2 Type: universal Location: 11640-11930 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7219-9818 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWU010000037.1 Clostridioides difficile strain clo06 genome assembly, contig: ERS080173SCcontig000037, whole genome shotgun sequence

⇒Summary: seq-len = 47963 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1321-2134 bp Zoom in on locus 1 x13 CRISPR array Location: 1321-2134 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1321-2134 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1321-2134 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CAAJWU010000022.1 Clostridioides difficile strain clo06 genome assembly, contig: ERS080173SCcontig000022, whole genome shotgun sequence

⇒Summary: seq-len = 75978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73247-74395 bp Zoom in on locus 1 x18 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 73247-74395 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73247-74395 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)