CRISPRone

CRISPRone report for GCA_901005025.1_7614_7_8

♦ Seq 1: CAAJXL010000002.1 Clostridioides difficile strain clo08 genome assembly, contig: ERS080175SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 354351 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11895-11989 bp 2 Locus 2: 53610-54235 bp Zoom in on locus 1 x2 Zoom in on locus 2 x10 CRISPR array Location: 11895-11989 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 11895-11989 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 53610-54235 bp Num of repeats: 10 Spacers: s2-s10 CRISPR array Location: 53610-54235 bp Num of repeats: 10 Spacers: s2-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11895-11989 bp]: array | spacers
           [Locus range 53610-54235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJXL010000004.1 Clostridioides difficile strain clo08 genome assembly, contig: ERS080175SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 289325 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78351-79037 bp 2 Locus 2: 287426-288383 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78351-79037 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78351-79037 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287426-288383 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287426-288383 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78351-79037 bp]: array | spacers
           [Locus range 287426-288383 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJXL010000005.1 Clostridioides difficile strain clo08 genome assembly, contig: ERS080175SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236327 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183355-191230 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183355-184464 bp Gene: pfam01881:cas6 Type: other Location: 184723-185460 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185465-186940 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186960-187973 bp Gene: cd09693:cas5 Type: Type-I Location: 187989-188795 bp Gene: cd09641:cas3HD Type: Type-I Location: 188822-191230 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJXL010000008.1 Clostridioides difficile strain clo08 genome assembly, contig: ERS080175SCcontig000008, whole genome shotgun sequence

⇒Summary: seq-len = 149068 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23198-25708 bp 2 Locus 2: 118092-118385 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23198-23487 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23198-23487 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25352-25708 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25352-25708 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118092-118385 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118092-118385 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23198-23487 bp]: array | spacers
           [Locus range 25352-25708 bp]: array | spacers
           [Locus range 118092-118385 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJXL010000010.1 Clostridioides difficile strain clo08 genome assembly, contig: ERS080175SCcontig000010, whole genome shotgun sequence

⇒Summary: seq-len = 141021 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16438-26747 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16438-17325 bp Gene: pfam01881:cas6 Type: other Location: 17403-18140 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18146-20023 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20025-20939 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20941-21642 bp Gene: COG1203:cas3 Type: Type-I Location: 21653-23974 bp Gene: pfam01930:cas4 Type: Type-I Location: 23989-24540 bp Gene: cd09722:cas1 Type: universal Location: 24543-25523 bp Gene: cd09725:cas2 Type: universal Location: 25526-25792 bp CRISPR array Location: 25976-27594 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 25976-27594 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26125-26292 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26514-26747 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25976-27594 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJXL010000014.1 Clostridioides difficile strain clo08 genome assembly, contig: ERS080175SCcontig000014, whole genome shotgun sequence

⇒Summary: seq-len = 126009 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69696-76228 bp Zoom in on locus 1 x10 CRISPR array Location: 69696-70318 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69696-70318 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70571-72556 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72567-73637 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73658-74824 bp Gene: pfam01881:cas6 Type: other Location: 74826-75590 bp Gene: cd09693:cas5 Type: Type-I Location: 75581-76228 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69696-70318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJXL010000001.1 Clostridioides difficile strain clo08 genome assembly, contig: ERS080175SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 410769 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 295084-295907 bp 2 Locus 2: 355144-358660 bp Zoom in on locus 1 x13 Zoom in on locus 2 CRISPR array Location: 295084-295907 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 295084-295907 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 355144-355512 bp Gene: unk Type: unknown Location: 355688-357211 bp Gene: cls000707:cas10 Type: Type-III Location: 357622-358221 bp Gene: cas14:cas14 Type: Type-V Location: 358367-358660 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 295084-295907 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)