CRISPRone

CRISPRone report for GCA_901005035.1_7614_7_9

♦ Seq 1: CAAJWY010000011.1 Clostridioides difficile strain clo09 genome assembly, contig: ERS080176SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 141021 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113429-124611 bp Zoom in on locus 1 x25 CRISPR array Location: 113429-115046 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 113429-115046 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 114275-114508 bp Gene: unk Type: unknown Location: 114730-114897 bp Gene: cd09725:cas2 Type: universal Location: 115230-115496 bp Gene: cd09722:cas1 Type: universal Location: 115499-116479 bp Gene: pfam01930:cas4 Type: Type-I Location: 116482-117000 bp Gene: COG1203:cas3 Type: Type-I Location: 117048-119369 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 119380-120081 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 120083-120997 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 120999-122876 bp Gene: pfam01881:cas6 Type: other Location: 122882-123676 bp Gene: pfam13280:WYL Type: other Location: 123697-124611 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 113429-115046 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJWY010000017.1 Clostridioides difficile strain clo09 genome assembly, contig: ERS080176SCcontig000017, whole genome shotgun sequence

⇒Summary: seq-len = 99674 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44824-45450 bp 2 Locus 2: 87070-87165 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 CRISPR array Location: 44824-45450 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 44824-45450 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 87070-87165 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 87070-87165 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44824-45450 bp]: array | spacers
           [Locus range 87070-87165 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJWY010000007.1 Clostridioides difficile strain clo09 genome assembly, contig: ERS080176SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 186125 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110427-116960 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 110427-111074 bp Gene: pfam01881:cas6 Type: other Location: 111065-111829 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 111831-112997 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 113018-114088 bp Gene: COG1203:cas3 Type: Type-I Location: 114099-116084 bp CRISPR array Location: 116337-116960 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 116337-116960 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116337-116960 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAJWY010000009.1 Clostridioides difficile strain clo09 genome assembly, contig: ERS080176SCcontig000009, whole genome shotgun sequence

⇒Summary: seq-len = 149170 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23300-25810 bp 2 Locus 2: 118194-118487 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23300-23589 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23300-23589 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25454-25810 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25454-25810 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118194-118487 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118194-118487 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23300-23589 bp]: array | spacers
           [Locus range 25454-25810 bp]: array | spacers
           [Locus range 118194-118487 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAJWY010000002.1 Clostridioides difficile strain clo09 genome assembly, contig: ERS080176SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 289270 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78287-78973 bp 2 Locus 2: 287362-288319 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78287-78973 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78287-78973 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287362-288319 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287362-288319 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78287-78973 bp]: array | spacers
           [Locus range 287362-288319 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAJWY010000005.1 Clostridioides difficile strain clo09 genome assembly, contig: ERS080176SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 236337 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183355-191230 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 183355-184464 bp Gene: pfam01881:cas6 Type: other Location: 184723-185460 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 185465-186940 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 186960-187973 bp Gene: cd09693:cas5 Type: Type-I Location: 187989-188795 bp Gene: cd09641:cas3HD Type: Type-I Location: 188822-191230 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CAAJWY010000001.1 Clostridioides difficile strain clo09 genome assembly, contig: ERS080176SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 408217 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 295084-295907 bp Zoom in on locus 1 x13 CRISPR array Location: 295084-295907 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 295084-295907 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 295084-295907 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)