CRISPRone

CRISPRone report for GCA_901005805.1_8140_6_12

♦ Seq 1: CAAJZX010000002.1 Clostridioides difficile strain LSHTM-12 genome assembly, contig: ERS139858SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194180-194275 bp Zoom in on locus 1 x2 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194180-194275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAJZX010000003.1 Clostridioides difficile strain LSHTM-12 genome assembly, contig: ERS139858SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345169 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95332-106290 bp 2 Locus 2: 157500-167223 bp 3 Locus 3: 247010-247235 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95332-95838 bp Gene: unk Type: unknown Location: 95997-96665 bp Gene: unk Type: unknown Location: 97078-97584 bp Gene: cd06127:DEDDh Type: Type-I Location: 97956-98993 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105805-106290 bp Gene: cd09641:cas3HD Type: Type-I Location: 157500-159908 bp Gene: cd09693:cas5 Type: Type-I Location: 159935-160732 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160748-161761 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161781-163247 bp Gene: pfam01881:cas6 Type: other Location: 163252-163989 bp Gene: unk Type: unknown Location: 164303-164761 bp Gene: cas14:cas14 Type: Type-V Location: 164789-165961 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166114-167223 bp CRISPR array Location: 247010-247235 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247010-247235 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247010-247235 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAJZX010000001.1 Clostridioides difficile strain LSHTM-12 genome assembly, contig: ERS139858SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 528567 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28710-28871 bp 2 Locus 2: 138130-138750 bp 3 Locus 3: 229599-232654 bp 4 Locus 4: 364043-364463 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 Zoom in on locus 4 x7 CRISPR array Location: 28710-28871 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28710-28871 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138130-138750 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138130-138750 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 229599-229826 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 229599-229826 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 232493-232654 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 232493-232654 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 364043-364463 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 364043-364463 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28710-28871 bp]: array | spacers
           [Locus range 138130-138750 bp]: array | spacers
           [Locus range 229599-229826 bp]: array | spacers
           [Locus range 232493-232654 bp]: array | spacers
           [Locus range 364043-364463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)