CRISPRone

CRISPRone report for GCA_901005815.1_8140_6_15

♦ Seq 1: CAAKAA010000003.1 Clostridioides difficile strain LSHTM-15 genome assembly, contig: ERS139861SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 376672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182399-182493 bp Zoom in on locus 1 x2 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAA010000001.1 Clostridioides difficile strain LSHTM-15 genome assembly, contig: ERS139861SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 590973 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95333-106291 bp 2 Locus 2: 157501-167224 bp 3 Locus 3: 247011-247236 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95333-95839 bp Gene: unk Type: unknown Location: 95998-96666 bp Gene: unk Type: unknown Location: 97079-97585 bp Gene: cd06127:DEDDh Type: Type-I Location: 97957-98994 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105806-106291 bp Gene: cd09641:cas3HD Type: Type-I Location: 157501-159909 bp Gene: cd09693:cas5 Type: Type-I Location: 159936-160733 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160749-161762 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161782-163248 bp Gene: pfam01881:cas6 Type: other Location: 163253-163990 bp Gene: unk Type: unknown Location: 164304-164762 bp Gene: cas14:cas14 Type: Type-V Location: 164790-165962 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166115-167224 bp CRISPR array Location: 247011-247236 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247011-247236 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247011-247236 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAA010000002.1 Clostridioides difficile strain LSHTM-15 genome assembly, contig: ERS139861SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 529253 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29114-29275 bp 2 Locus 2: 138534-139154 bp 3 Locus 3: 230003-233058 bp 4 Locus 4: 364447-364867 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 Zoom in on locus 4 x7 CRISPR array Location: 29114-29275 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29114-29275 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138534-139154 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138534-139154 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 230003-230230 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 230003-230230 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 232897-233058 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 232897-233058 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 364447-364867 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 364447-364867 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29114-29275 bp]: array | spacers
           [Locus range 138534-139154 bp]: array | spacers
           [Locus range 230003-230230 bp]: array | spacers
           [Locus range 232897-233058 bp]: array | spacers
           [Locus range 364447-364867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)