CRISPRone

CRISPRone report for GCA_901005825.1_8140_6_16

♦ Seq 1: CAAKAE010000003.1 Clostridioides difficile strain LSHTM-16 genome assembly, contig: ERS139862SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 372231 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 183026-183120 bp Zoom in on locus 1 x2 CRISPR array Location: 183026-183120 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 183026-183120 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 183026-183120 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAE010000001.1 Clostridioides difficile strain LSHTM-16 genome assembly, contig: ERS139862SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 606916 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 357071-368029 bp 2 Locus 2: 419239-428962 bp 3 Locus 3: 508749-508974 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 357071-357577 bp Gene: unk Type: unknown Location: 357736-358404 bp Gene: unk Type: unknown Location: 358817-359323 bp Gene: cd06127:DEDDh Type: Type-I Location: 359695-360732 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 367544-368029 bp Gene: cd09641:cas3HD Type: Type-I Location: 419239-421647 bp Gene: cd09693:cas5 Type: Type-I Location: 421674-422471 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 422487-423500 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 423520-424986 bp Gene: pfam01881:cas6 Type: other Location: 424991-425728 bp Gene: unk Type: unknown Location: 426042-426500 bp Gene: cas14:cas14 Type: Type-V Location: 426528-427700 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 427853-428962 bp CRISPR array Location: 508749-508974 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 508749-508974 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 508749-508974 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAE010000002.1 Clostridioides difficile strain LSHTM-16 genome assembly, contig: ERS139862SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 529124 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29114-29275 bp 2 Locus 2: 138534-139154 bp 3 Locus 3: 230003-233058 bp 4 Locus 4: 364447-364867 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 Zoom in on locus 4 x7 CRISPR array Location: 29114-29275 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 29114-29275 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138534-139154 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138534-139154 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 230003-230230 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 230003-230230 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 232897-233058 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 232897-233058 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 364447-364867 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 364447-364867 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29114-29275 bp]: array | spacers
           [Locus range 138534-139154 bp]: array | spacers
           [Locus range 230003-230230 bp]: array | spacers
           [Locus range 232897-233058 bp]: array | spacers
           [Locus range 364447-364867 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)