CRISPRone

CRISPRone report for GCA_901005895.1_8140_6_25

♦ Seq 1: CAAKAG010000002.1 Clostridioides difficile strain LSHTM-25 genome assembly, contig: ERS139871SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 375597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182399-182493 bp Zoom in on locus 1 x2 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAG010000003.1 Clostridioides difficile strain LSHTM-25 genome assembly, contig: ERS139871SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345225 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95388-106346 bp 2 Locus 2: 157556-167279 bp 3 Locus 3: 247066-247291 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95388-95894 bp Gene: unk Type: unknown Location: 96053-96721 bp Gene: unk Type: unknown Location: 97134-97640 bp Gene: cd06127:DEDDh Type: Type-I Location: 98012-99049 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105861-106346 bp Gene: cd09641:cas3HD Type: Type-I Location: 157556-159964 bp Gene: cd09693:cas5 Type: Type-I Location: 159991-160788 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160804-161817 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161837-163303 bp Gene: pfam01881:cas6 Type: other Location: 163308-164045 bp Gene: unk Type: unknown Location: 164359-164817 bp Gene: cas14:cas14 Type: Type-V Location: 164845-166017 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166170-167279 bp CRISPR array Location: 247066-247291 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247066-247291 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247066-247291 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAG010000001.1 Clostridioides difficile strain LSHTM-25 genome assembly, contig: ERS139871SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 528473 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28790-28951 bp 2 Locus 2: 138210-138503 bp 3 Locus 3: 229352-232407 bp 4 Locus 4: 363796-364216 bp Zoom in on locus 1 x3 Zoom in on locus 2 x5 Zoom in on locus 3 x4 x3 Zoom in on locus 4 x7 CRISPR array Location: 28790-28951 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28790-28951 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138210-138503 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 138210-138503 bp Num of repeats: 5 Spacers: s3-s6 CRISPR array Location: 229352-229579 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 229352-229579 bp Num of repeats: 4 Spacers: s7-s9 CRISPR array Location: 232246-232407 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 232246-232407 bp Num of repeats: 3 Spacers: s10-s11 CRISPR array Location: 363796-364216 bp Num of repeats: 7 Spacers: s12-s17 CRISPR array Location: 363796-364216 bp Num of repeats: 7 Spacers: s12-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28790-28951 bp]: array | spacers
           [Locus range 138210-138503 bp]: array | spacers
           [Locus range 229352-229579 bp]: array | spacers
           [Locus range 232246-232407 bp]: array | spacers
           [Locus range 363796-364216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)