CRISPRone

CRISPRone report for GCA_901005915.1_8140_6_28

♦ Seq 1: CAAKAI010000003.1 Clostridioides difficile strain LSHTM-28 genome assembly, contig: ERS139874SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293390 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164102-164521 bp Zoom in on locus 1 x7 CRISPR array Location: 164102-164521 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164102-164521 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164102-164521 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAI010000006.1 Clostridioides difficile strain LSHTM-28 genome assembly, contig: ERS139874SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 244271 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28710-28871 bp 2 Locus 2: 138130-138750 bp 3 Locus 3: 229599-232654 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 CRISPR array Location: 28710-28871 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28710-28871 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138130-138750 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138130-138750 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 229599-229826 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 229599-229826 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 232493-232654 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 232493-232654 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28710-28871 bp]: array | spacers
           [Locus range 138130-138750 bp]: array | spacers
           [Locus range 229599-229826 bp]: array | spacers
           [Locus range 232493-232654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAI010000001.1 Clostridioides difficile strain LSHTM-28 genome assembly, contig: ERS139874SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 372841 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190349-190444 bp Zoom in on locus 1 x2 CRISPR array Location: 190349-190444 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 190349-190444 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190349-190444 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKAI010000002.1 Clostridioides difficile strain LSHTM-28 genome assembly, contig: ERS139874SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345322 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98109-98335 bp 2 Locus 2: 178121-187844 bp 3 Locus 3: 239054-250012 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 98109-98335 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 98109-98335 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178121-179230 bp Gene: cas14:cas14 Type: Type-V Location: 179383-180555 bp Gene: unk Type: unknown Location: 180583-181041 bp Gene: pfam01881:cas6 Type: other Location: 181355-182092 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 182097-183563 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183583-184596 bp Gene: cd09693:cas5 Type: Type-I Location: 184612-185409 bp Gene: cd09641:cas3HD Type: Type-I Location: 185436-187844 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239054-239539 bp Gene: cd06127:DEDDh Type: Type-I Location: 246342-247388 bp Gene: unk Type: unknown Location: 247760-248266 bp Gene: unk Type: unknown Location: 248679-249347 bp Gene: cd06127:DEDDh Type: Type-I Location: 249506-250012 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98109-98335 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)