CRISPRone

CRISPRone report for GCA_901005925.1_8140_6_29

♦ Seq 1: CAAKAJ010000003.1 Clostridioides difficile strain LSHTM-29 genome assembly, contig: ERS139978SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 376671 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194180-194275 bp Zoom in on locus 1 x2 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194180-194275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAJ010000002.1 Clostridioides difficile strain LSHTM-29 genome assembly, contig: ERS139978SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 483391 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164106-164525 bp 2 Locus 2: 344563-345182 bp 3 Locus 3: 454442-454602 bp Zoom in on locus 1 x7 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 164106-164525 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164106-164525 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 344563-345182 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 344563-345182 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 454442-454602 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 454442-454602 bp Num of repeats: 3 Spacers: s16-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164106-164525 bp]: array | spacers
           [Locus range 344563-345182 bp]: array | spacers
           [Locus range 454442-454602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAJ010000001.1 Clostridioides difficile strain LSHTM-29 genome assembly, contig: ERS139978SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 585176 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98011-98237 bp 2 Locus 2: 178023-187746 bp 3 Locus 3: 238955-249913 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 98011-98237 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 98011-98237 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178023-179132 bp Gene: cas14:cas14 Type: Type-V Location: 179285-180457 bp Gene: unk Type: unknown Location: 180485-180943 bp Gene: pfam01881:cas6 Type: other Location: 181257-181994 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181999-183465 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183485-184498 bp Gene: cd09693:cas5 Type: Type-I Location: 184514-185311 bp Gene: cd09641:cas3HD Type: Type-I Location: 185338-187746 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238955-239440 bp Gene: cd06127:DEDDh Type: Type-I Location: 246243-247289 bp Gene: unk Type: unknown Location: 247661-248167 bp Gene: unk Type: unknown Location: 248580-249248 bp Gene: cd06127:DEDDh Type: Type-I Location: 249407-249913 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98011-98237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)