CRISPRone

CRISPRone report for GCA_901005965.1_8140_6_38

♦ Seq 1: CAAKAP010000003.1 Clostridioides difficile strain LSHTM-38 genome assembly, contig: ERS139987SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 377197 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 194143-194238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAP010000001.1 Clostridioides difficile strain LSHTM-38 genome assembly, contig: ERS139987SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 538981 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 164266-164685 bp]: array | spacers
           [Locus range 305925-306085 bp]: array | spacers
           [Locus range 308753-308979 bp]: array | spacers
           [Locus range 399829-400448 bp]: array | spacers
           [Locus range 509708-509868 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAP010000002.1 Clostridioides difficile strain LSHTM-38 genome assembly, contig: ERS139987SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 429796 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 331348-331573 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)