CRISPRone

CRISPRone report for GCA_901006015.1_8140_6_35

♦ Seq 1: CAAKAX010000038.1 Clostridioides difficile strain LSHTM-35 genome assembly, contig: ERS139954SCcontig000038, whole genome shotgun sequence

⇒Summary: seq-len = 9410 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5808-6296 bp Zoom in on locus 1 x8 CRISPR array Location: 5808-6296 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5808-6296 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5808-6296 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAX010000036.1 Clostridioides difficile strain LSHTM-35 genome assembly, contig: ERS139954SCcontig000036, whole genome shotgun sequence

⇒Summary: seq-len = 12752 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6135-9189 bp Zoom in on locus 1 x3 x4 CRISPR array Location: 6135-6295 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6135-6295 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8963-9189 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 8963-9189 bp Num of repeats: 4 Spacers: s3-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6135-6295 bp]: array | spacers
           [Locus range 8963-9189 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAX010000006.1 Clostridioides difficile strain LSHTM-35 genome assembly, contig: ERS139954SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 217998 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28856-29017 bp 2 Locus 2: 138276-138896 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 CRISPR array Location: 28856-29017 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28856-29017 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138276-138896 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138276-138896 bp Num of repeats: 10 Spacers: s3-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28856-29017 bp]: array | spacers
           [Locus range 138276-138896 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKAX010000003.1 Clostridioides difficile strain LSHTM-35 genome assembly, contig: ERS139954SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293555 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128878-129298 bp Zoom in on locus 1 x7 CRISPR array Location: 128878-129298 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128878-129298 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128878-129298 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAKAX010000001.1 Clostridioides difficile strain LSHTM-35 genome assembly, contig: ERS139954SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 585130 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 335282-346240 bp 2 Locus 2: 397455-407178 bp 3 Locus 3: 486965-487190 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 335282-335788 bp Gene: unk Type: unknown Location: 335947-336615 bp Gene: unk Type: unknown Location: 337028-337534 bp Gene: cd06127:DEDDh Type: Type-I Location: 337906-338943 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 345755-346240 bp Gene: cd09641:cas3HD Type: Type-I Location: 397455-399863 bp Gene: cd09693:cas5 Type: Type-I Location: 399890-400687 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 400703-401716 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 401736-403202 bp Gene: pfam01881:cas6 Type: other Location: 403207-403944 bp Gene: unk Type: unknown Location: 404258-404716 bp Gene: cas14:cas14 Type: Type-V Location: 404744-405916 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 406069-407178 bp CRISPR array Location: 486965-487190 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 486965-487190 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 486965-487190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAKAX010000002.1 Clostridioides difficile strain LSHTM-35 genome assembly, contig: ERS139954SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194180-194275 bp Zoom in on locus 1 x2 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194180-194275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)