CRISPRone

CRISPRone report for GCA_901006045.1_8140_6_42

♦ Seq 1: CAAKAU010000002.1 Clostridioides difficile strain LSHTM-42 genome assembly, contig: ERS139888SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345164 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 247009-247234 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAU010000005.1 Clostridioides difficile strain LSHTM-42 genome assembly, contig: ERS139888SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 244787 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 12135-12295 bp]: array | spacers
           [Locus range 14963-15189 bp]: array | spacers
           [Locus range 106039-106658 bp]: array | spacers
           [Locus range 215918-216078 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAU010000001.1 Clostridioides difficile strain LSHTM-42 genome assembly, contig: ERS139888SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376635 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 194143-194238 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKAU010000003.1 Clostridioides difficile strain LSHTM-42 genome assembly, contig: ERS139888SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 128870-129290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)