CRISPRone

CRISPRone report for GCA_901006055.1_8140_6_41

♦ Seq 1: CAAKAZ010000003.1 Clostridioides difficile strain LSHTM-41 genome assembly, contig: ERS139956SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 376150 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 193095-193190 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAZ010000002.1 Clostridioides difficile strain LSHTM-41 genome assembly, contig: ERS139956SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 538496 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 28789-28950 bp]: array | spacers
           [Locus range 138209-138829 bp]: array | spacers
           [Locus range 229678-229905 bp]: array | spacers
           [Locus range 232572-232733 bp]: array | spacers
           [Locus range 373972-374392 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAZ010000001.1 Clostridioides difficile strain LSHTM-41 genome assembly, contig: ERS139956SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 624153 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 98011-98237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)