CRISPRone

CRISPRone report for GCA_901006065.1_8140_6_43

♦ Seq 1: CAAKBA010000002.1 Clostridioides difficile strain LSHTM-43 genome assembly, contig: ERS139889SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 373386 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBA010000001.1 Clostridioides difficile strain LSHTM-43 genome assembly, contig: ERS139889SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 528643 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 28790-28951 bp]: array | spacers
           [Locus range 138210-138830 bp]: array | spacers
           [Locus range 229679-229906 bp]: array | spacers
           [Locus range 232573-232734 bp]: array | spacers
           [Locus range 364123-364543 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBA010000003.1 Clostridioides difficile strain LSHTM-43 genome assembly, contig: ERS139889SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345106 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 97931-98157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)