CRISPRone

CRISPRone report for GCA_901006085.1_8140_6_48

♦ Seq 1: CAAKAW010000002.1 Clostridioides difficile strain LSHTM-48 genome assembly, contig: ERS139894SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 372841 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 190349-190444 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAW010000001.1 Clostridioides difficile strain LSHTM-48 genome assembly, contig: ERS139894SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 528570 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR)

⇒Cas loci & CRISPR arrays: gff file

⇒CRISPR arrays :
           [Locus range 28710-28871 bp]: array | spacers
           [Locus range 138130-138750 bp]: array | spacers
           [Locus range 229599-229826 bp]: array | spacers
           [Locus range 232493-232654 bp]: array | spacers
           [Locus range 364043-364463 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAW010000003.1 Clostridioides difficile strain LSHTM-48 genome assembly, contig: ERS139894SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 349823 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) 

⇒Cas loci & CRISPR arrays: gff file

⇒Predicted cas genes: protein | gene

⇒CRISPR arrays :
           [Locus range 251668-251893 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)