CRISPRone

CRISPRone report for GCA_901006095.1_8140_6_45

♦ Seq 1: CAAKBE010000003.1 Clostridioides difficile strain LSHTM-45 genome assembly, contig: ERS139891SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 284174 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119647-120067 bp Zoom in on locus 1 x7 CRISPR array Location: 119647-120067 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 119647-120067 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 119647-120067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBE010000006.1 Clostridioides difficile strain LSHTM-45 genome assembly, contig: ERS139891SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 244269 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11617-14671 bp 2 Locus 2: 105521-106140 bp 3 Locus 3: 215400-215560 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 11617-11777 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11617-11777 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14445-14671 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14445-14671 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 105521-106140 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 105521-106140 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215400-215560 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215400-215560 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11617-11777 bp]: array | spacers
           [Locus range 14445-14671 bp]: array | spacers
           [Locus range 105521-106140 bp]: array | spacers
           [Locus range 215400-215560 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBE010000002.1 Clostridioides difficile strain LSHTM-45 genome assembly, contig: ERS139891SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 372547 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190055-190150 bp Zoom in on locus 1 x2 CRISPR array Location: 190055-190150 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 190055-190150 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190055-190150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKBE010000001.1 Clostridioides difficile strain LSHTM-45 genome assembly, contig: ERS139891SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 585096 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 335225-346183 bp 2 Locus 2: 397393-407116 bp 3 Locus 3: 486903-487128 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 335225-335731 bp Gene: unk Type: unknown Location: 335890-336558 bp Gene: unk Type: unknown Location: 336971-337477 bp Gene: cd06127:DEDDh Type: Type-I Location: 337849-338886 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 345698-346183 bp Gene: cd09641:cas3HD Type: Type-I Location: 397393-399801 bp Gene: cd09693:cas5 Type: Type-I Location: 399828-400625 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 400641-401654 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 401674-403140 bp Gene: pfam01881:cas6 Type: other Location: 403145-403882 bp Gene: unk Type: unknown Location: 404196-404654 bp Gene: cas14:cas14 Type: Type-V Location: 404682-405854 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 406007-407116 bp CRISPR array Location: 486903-487128 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 486903-487128 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 486903-487128 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)