CRISPRone

CRISPRone report for GCA_901006105.1_8140_6_44

♦ Seq 1: CAAKAY010000007.1 Clostridioides difficile strain LSHTM-44 genome assembly, contig: ERS139957SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 219069 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164109-164528 bp Zoom in on locus 1 x7 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164109-164528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKAY010000005.1 Clostridioides difficile strain LSHTM-44 genome assembly, contig: ERS139957SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 244347 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11615-14669 bp 2 Locus 2: 105519-106138 bp 3 Locus 3: 215398-215558 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 11615-11775 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11615-11775 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14443-14669 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14443-14669 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 105519-106138 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 105519-106138 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215398-215558 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215398-215558 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11615-11775 bp]: array | spacers
           [Locus range 14443-14669 bp]: array | spacers
           [Locus range 105519-106138 bp]: array | spacers
           [Locus range 215398-215558 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKAY010000001.1 Clostridioides difficile strain LSHTM-44 genome assembly, contig: ERS139957SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376607 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182399-182493 bp Zoom in on locus 1 x2 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKAY010000002.1 Clostridioides difficile strain LSHTM-44 genome assembly, contig: ERS139957SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345177 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95309-106267 bp 2 Locus 2: 157477-167200 bp 3 Locus 3: 246987-247212 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95309-95815 bp Gene: unk Type: unknown Location: 95974-96642 bp Gene: unk Type: unknown Location: 97055-97561 bp Gene: cd06127:DEDDh Type: Type-I Location: 97933-98970 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105782-106267 bp Gene: cd09641:cas3HD Type: Type-I Location: 157477-159885 bp Gene: cd09693:cas5 Type: Type-I Location: 159912-160709 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160725-161738 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161758-163224 bp Gene: pfam01881:cas6 Type: other Location: 163229-163966 bp Gene: unk Type: unknown Location: 164280-164738 bp Gene: cas14:cas14 Type: Type-V Location: 164766-165938 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166091-167200 bp CRISPR array Location: 246987-247212 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246987-247212 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 246987-247212 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)