CRISPRone

CRISPRone report for GCA_901006115.1_8140_6_52

♦ Seq 1: CAAKBB010000002.1 Clostridioides difficile strain LSHTM-52 genome assembly, contig: ERS139898SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 377205 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182962-183056 bp Zoom in on locus 1 x2 CRISPR array Location: 182962-183056 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182962-183056 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182962-183056 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBB010000003.1 Clostridioides difficile strain LSHTM-52 genome assembly, contig: ERS139898SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293399 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164109-164528 bp Zoom in on locus 1 x7 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164109-164528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBB010000004.1 Clostridioides difficile strain LSHTM-52 genome assembly, contig: ERS139898SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 244869 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12137-15191 bp 2 Locus 2: 106041-106660 bp 3 Locus 3: 215920-216080 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 12137-12297 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12137-12297 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14965-15191 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14965-15191 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 106041-106660 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 106041-106660 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215920-216080 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215920-216080 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12137-12297 bp]: array | spacers
           [Locus range 14965-15191 bp]: array | spacers
           [Locus range 106041-106660 bp]: array | spacers
           [Locus range 215920-216080 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKBB010000001.1 Clostridioides difficile strain LSHTM-52 genome assembly, contig: ERS139898SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 600376 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97933-98159 bp 2 Locus 2: 177945-187668 bp 3 Locus 3: 238878-249836 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97933-98159 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97933-98159 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177945-179054 bp Gene: cas14:cas14 Type: Type-V Location: 179207-180379 bp Gene: unk Type: unknown Location: 180407-180865 bp Gene: pfam01881:cas6 Type: other Location: 181179-181916 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181921-183387 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183407-184420 bp Gene: cd09693:cas5 Type: Type-I Location: 184436-185233 bp Gene: cd09641:cas3HD Type: Type-I Location: 185260-187668 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238878-239363 bp Gene: cd06127:DEDDh Type: Type-I Location: 246166-247212 bp Gene: unk Type: unknown Location: 247584-248090 bp Gene: unk Type: unknown Location: 248503-249171 bp Gene: cd06127:DEDDh Type: Type-I Location: 249330-249836 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97933-98159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)