CRISPRone

CRISPRone report for GCA_901006135.1_8140_6_53

♦ Seq 1: CAAKBC010000002.1 Clostridioides difficile strain LSHTM-53 genome assembly, contig: ERS139960SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345183 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95349-106307 bp 2 Locus 2: 157517-167240 bp 3 Locus 3: 247027-247252 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95349-95855 bp Gene: unk Type: unknown Location: 96014-96682 bp Gene: unk Type: unknown Location: 97095-97601 bp Gene: cd06127:DEDDh Type: Type-I Location: 97973-99010 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105822-106307 bp Gene: cd09641:cas3HD Type: Type-I Location: 157517-159925 bp Gene: cd09693:cas5 Type: Type-I Location: 159952-160749 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160765-161778 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161798-163264 bp Gene: pfam01881:cas6 Type: other Location: 163269-164006 bp Gene: unk Type: unknown Location: 164320-164778 bp Gene: cas14:cas14 Type: Type-V Location: 164806-165978 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166131-167240 bp CRISPR array Location: 247027-247252 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247027-247252 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247027-247252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBC010000003.1 Clostridioides difficile strain LSHTM-53 genome assembly, contig: ERS139960SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293407 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128880-129300 bp Zoom in on locus 1 x7 CRISPR array Location: 128880-129300 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128880-129300 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128880-129300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBC010000005.1 Clostridioides difficile strain LSHTM-53 genome assembly, contig: ERS139960SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 244868 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12136-15190 bp 2 Locus 2: 106040-106659 bp 3 Locus 3: 215919-216079 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 12136-12296 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12136-12296 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14964-15190 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14964-15190 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 106040-106659 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 106040-106659 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215919-216079 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215919-216079 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12136-12296 bp]: array | spacers
           [Locus range 14964-15190 bp]: array | spacers
           [Locus range 106040-106659 bp]: array | spacers
           [Locus range 215919-216079 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKBC010000001.1 Clostridioides difficile strain LSHTM-53 genome assembly, contig: ERS139960SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194150-194245 bp Zoom in on locus 1 x2 CRISPR array Location: 194150-194245 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194150-194245 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194150-194245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)