CRISPRone

CRISPRone report for GCA_901006155.1_8140_6_55

♦ Seq 1: CAAKBI010000002.1 Clostridioides difficile strain LSHTM-55 genome assembly, contig: ERS139901SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 463036 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98495-98914 bp 2 Locus 2: 230304-233358 bp 3 Locus 3: 324208-324827 bp 4 Locus 4: 434087-434247 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x4 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 98495-98914 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 98495-98914 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 230304-230464 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 230304-230464 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 233132-233358 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 233132-233358 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 324208-324827 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 324208-324827 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 434087-434247 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 434087-434247 bp Num of repeats: 3 Spacers: s21-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98495-98914 bp]: array | spacers
           [Locus range 230304-230464 bp]: array | spacers
           [Locus range 233132-233358 bp]: array | spacers
           [Locus range 324208-324827 bp]: array | spacers
           [Locus range 434087-434247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBI010000001.1 Clostridioides difficile strain LSHTM-55 genome assembly, contig: ERS139901SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 584960 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 335127-346085 bp 2 Locus 2: 397295-407018 bp 3 Locus 3: 486805-487030 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 335127-335633 bp Gene: unk Type: unknown Location: 335792-336460 bp Gene: unk Type: unknown Location: 336873-337379 bp Gene: cd06127:DEDDh Type: Type-I Location: 337751-338788 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 345600-346085 bp Gene: cd09641:cas3HD Type: Type-I Location: 397295-399703 bp Gene: cd09693:cas5 Type: Type-I Location: 399730-400527 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 400543-401556 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 401576-403042 bp Gene: pfam01881:cas6 Type: other Location: 403047-403784 bp Gene: unk Type: unknown Location: 404098-404556 bp Gene: cas14:cas14 Type: Type-V Location: 404584-405756 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 405909-407018 bp CRISPR array Location: 486805-487030 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 486805-487030 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 486805-487030 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBI010000003.1 Clostridioides difficile strain LSHTM-55 genome assembly, contig: ERS139901SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 376672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182399-182493 bp Zoom in on locus 1 x2 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)