CRISPRone

CRISPRone report for GCA_901006175.1_8140_6_5

♦ Seq 1: CAAKBG010000001.1 Clostridioides difficile strain LSHTM-5 genome assembly, contig: ERS139944SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 528719 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164109-164528 bp 2 Locus 2: 295918-298972 bp 3 Locus 3: 389822-390441 bp 4 Locus 4: 499701-499861 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x4 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 295918-296078 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 295918-296078 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 298746-298972 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 298746-298972 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 389822-390441 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 389822-390441 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 499701-499861 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 499701-499861 bp Num of repeats: 3 Spacers: s21-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164109-164528 bp]: array | spacers
           [Locus range 295918-296078 bp]: array | spacers
           [Locus range 298746-298972 bp]: array | spacers
           [Locus range 389822-390441 bp]: array | spacers
           [Locus range 499701-499861 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBG010000003.1 Clostridioides difficile strain LSHTM-5 genome assembly, contig: ERS139944SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345150 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95313-106271 bp 2 Locus 2: 157481-167204 bp 3 Locus 3: 246991-247216 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95313-95819 bp Gene: unk Type: unknown Location: 95978-96646 bp Gene: unk Type: unknown Location: 97059-97565 bp Gene: cd06127:DEDDh Type: Type-I Location: 97937-98974 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105786-106271 bp Gene: cd09641:cas3HD Type: Type-I Location: 157481-159889 bp Gene: cd09693:cas5 Type: Type-I Location: 159916-160713 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160729-161742 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161762-163228 bp Gene: pfam01881:cas6 Type: other Location: 163233-163970 bp Gene: unk Type: unknown Location: 164284-164742 bp Gene: cas14:cas14 Type: Type-V Location: 164770-165942 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166095-167204 bp CRISPR array Location: 246991-247216 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246991-247216 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 246991-247216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBG010000002.1 Clostridioides difficile strain LSHTM-5 genome assembly, contig: ERS139944SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 373153 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182399-182493 bp Zoom in on locus 1 x2 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)