CRISPRone

CRISPRone report for GCA_901006185.1_8140_6_66

♦ Seq 1: CAAKBK010000001.1 Clostridioides difficile strain LSHTM-66 genome assembly, contig: ERS139912SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 585183 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 335270-346228 bp 2 Locus 2: 397438-407161 bp 3 Locus 3: 486948-487173 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 335270-335776 bp Gene: unk Type: unknown Location: 335935-336603 bp Gene: unk Type: unknown Location: 337016-337522 bp Gene: cd06127:DEDDh Type: Type-I Location: 337894-338931 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 345743-346228 bp Gene: cd09641:cas3HD Type: Type-I Location: 397438-399846 bp Gene: cd09693:cas5 Type: Type-I Location: 399873-400670 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 400686-401699 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 401719-403185 bp Gene: pfam01881:cas6 Type: other Location: 403190-403927 bp Gene: unk Type: unknown Location: 404241-404699 bp Gene: cas14:cas14 Type: Type-V Location: 404727-405899 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 406052-407161 bp CRISPR array Location: 486948-487173 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 486948-487173 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 486948-487173 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBK010000003.1 Clostridioides difficile strain LSHTM-66 genome assembly, contig: ERS139912SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293401 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128874-129294 bp Zoom in on locus 1 x7 CRISPR array Location: 128874-129294 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128874-129294 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128874-129294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBK010000004.1 Clostridioides difficile strain LSHTM-66 genome assembly, contig: ERS139912SCcontig000004, whole genome shotgun sequence

⇒Summary: seq-len = 244737 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28710-28871 bp 2 Locus 2: 138076-138696 bp 3 Locus 3: 229545-232600 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 CRISPR array Location: 28710-28871 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28710-28871 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138076-138696 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138076-138696 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 229545-229772 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 229545-229772 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 232439-232600 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 232439-232600 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28710-28871 bp]: array | spacers
           [Locus range 138076-138696 bp]: array | spacers
           [Locus range 229545-229772 bp]: array | spacers
           [Locus range 232439-232600 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKBK010000002.1 Clostridioides difficile strain LSHTM-66 genome assembly, contig: ERS139912SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 373626 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 190571-190666 bp Zoom in on locus 1 x2 CRISPR array Location: 190571-190666 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 190571-190666 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 190571-190666 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)