CRISPRone

CRISPRone report for GCA_901006245.1_8140_6_80

♦ Seq 1: CAAKBO010000002.1 Clostridioides difficile strain LSHTM-80 genome assembly, contig: ERS139969SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345294 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98011-98237 bp 2 Locus 2: 178023-187746 bp 3 Locus 3: 238956-249914 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 98011-98237 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 98011-98237 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178023-179132 bp Gene: cas14:cas14 Type: Type-V Location: 179285-180457 bp Gene: unk Type: unknown Location: 180485-180943 bp Gene: pfam01881:cas6 Type: other Location: 181257-181994 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181999-183465 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183485-184498 bp Gene: cd09693:cas5 Type: Type-I Location: 184514-185311 bp Gene: cd09641:cas3HD Type: Type-I Location: 185338-187746 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238956-239441 bp Gene: cd06127:DEDDh Type: Type-I Location: 246244-247290 bp Gene: unk Type: unknown Location: 247662-248168 bp Gene: unk Type: unknown Location: 248581-249249 bp Gene: cd06127:DEDDh Type: Type-I Location: 249408-249914 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 98011-98237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBO010000005.1 Clostridioides difficile strain LSHTM-80 genome assembly, contig: ERS139969SCcontig000005, whole genome shotgun sequence

⇒Summary: seq-len = 244791 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12139-15193 bp 2 Locus 2: 106043-106662 bp 3 Locus 3: 215922-216082 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 12139-12299 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12139-12299 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14967-15193 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14967-15193 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 106043-106662 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 106043-106662 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215922-216082 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215922-216082 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12139-12299 bp]: array | spacers
           [Locus range 14967-15193 bp]: array | spacers
           [Locus range 106043-106662 bp]: array | spacers
           [Locus range 215922-216082 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBO010000001.1 Clostridioides difficile strain LSHTM-80 genome assembly, contig: ERS139969SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 375496 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182398-182492 bp Zoom in on locus 1 x2 CRISPR array Location: 182398-182492 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182398-182492 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182398-182492 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKBO010000003.1 Clostridioides difficile strain LSHTM-80 genome assembly, contig: ERS139969SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293398 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128874-129294 bp Zoom in on locus 1 x7 CRISPR array Location: 128874-129294 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128874-129294 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128874-129294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)