CRISPRone

CRISPRone report for GCA_901006275.1_8140_6_74

♦ Seq 1: CAAKBT010000001.1 Clostridioides difficile strain LSHTM-74 genome assembly, contig: ERS139983SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194180-194275 bp Zoom in on locus 1 x2 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194180-194275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBT010000006.1 Clostridioides difficile strain LSHTM-74 genome assembly, contig: ERS139983SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 244358 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11626-14680 bp 2 Locus 2: 105530-106149 bp 3 Locus 3: 215409-215569 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 11626-11786 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11626-11786 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14454-14680 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14454-14680 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 105530-106149 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 105530-106149 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215409-215569 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215409-215569 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11626-11786 bp]: array | spacers
           [Locus range 14454-14680 bp]: array | spacers
           [Locus range 105530-106149 bp]: array | spacers
           [Locus range 215409-215569 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBT010000003.1 Clostridioides difficile strain LSHTM-74 genome assembly, contig: ERS139983SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128870-129290 bp Zoom in on locus 1 x7 CRISPR array Location: 128870-129290 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128870-129290 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128870-129290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKBT010000002.1 Clostridioides difficile strain LSHTM-74 genome assembly, contig: ERS139983SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345186 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95352-106310 bp 2 Locus 2: 157520-167243 bp 3 Locus 3: 247031-247256 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95352-95858 bp Gene: unk Type: unknown Location: 96017-96685 bp Gene: unk Type: unknown Location: 97098-97604 bp Gene: cd06127:DEDDh Type: Type-I Location: 97976-99013 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105825-106310 bp Gene: cd09641:cas3HD Type: Type-I Location: 157520-159928 bp Gene: cd09693:cas5 Type: Type-I Location: 159955-160752 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160768-161781 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161801-163267 bp Gene: pfam01881:cas6 Type: other Location: 163272-164009 bp Gene: unk Type: unknown Location: 164323-164781 bp Gene: cas14:cas14 Type: Type-V Location: 164809-165981 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166134-167243 bp CRISPR array Location: 247031-247256 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 247031-247256 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 247031-247256 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)