CRISPRone

CRISPRone report for GCA_901006285.1_8140_6_76

♦ Seq 1: CAAKBQ010000001.1 Clostridioides difficile strain LSHTM-76 genome assembly, contig: ERS139922SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 376672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182399-182493 bp Zoom in on locus 1 x2 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182399-182493 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182399-182493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBQ010000003.1 Clostridioides difficile strain LSHTM-76 genome assembly, contig: ERS139922SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164109-164528 bp Zoom in on locus 1 x7 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164109-164528 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBQ010000002.1 Clostridioides difficile strain LSHTM-76 genome assembly, contig: ERS139922SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 345148 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 95315-106273 bp 2 Locus 2: 157483-167206 bp 3 Locus 3: 246993-247218 bp Zoom in on locus 1 Zoom in on locus 2 Zoom in on locus 3 x4 Gene: cd06127:DEDDh Type: Type-I Location: 95315-95821 bp Gene: unk Type: unknown Location: 95980-96648 bp Gene: unk Type: unknown Location: 97061-97567 bp Gene: cd06127:DEDDh Type: Type-I Location: 97939-98976 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 105788-106273 bp Gene: cd09641:cas3HD Type: Type-I Location: 157483-159891 bp Gene: cd09693:cas5 Type: Type-I Location: 159918-160715 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 160731-161744 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 161764-163230 bp Gene: pfam01881:cas6 Type: other Location: 163235-163972 bp Gene: unk Type: unknown Location: 164286-164744 bp Gene: cas14:cas14 Type: Type-V Location: 164772-165944 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166097-167206 bp CRISPR array Location: 246993-247218 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 246993-247218 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 246993-247218 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKBQ010000006.1 Clostridioides difficile strain LSHTM-76 genome assembly, contig: ERS139922SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 244347 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28790-28951 bp 2 Locus 2: 138210-138830 bp 3 Locus 3: 229679-232734 bp Zoom in on locus 1 x3 Zoom in on locus 2 x10 Zoom in on locus 3 x4 x3 CRISPR array Location: 28790-28951 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28790-28951 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 138210-138830 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 138210-138830 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 229679-229906 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 229679-229906 bp Num of repeats: 4 Spacers: s12-s14 CRISPR array Location: 232573-232734 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 232573-232734 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28790-28951 bp]: array | spacers
           [Locus range 138210-138830 bp]: array | spacers
           [Locus range 229679-229906 bp]: array | spacers
           [Locus range 232573-232734 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)