CRISPRone

CRISPRone report for GCA_901006325.1_8140_6_81

♦ Seq 1: CAAKBY010000003.1 Clostridioides difficile strain LSHTM-81 genome assembly, contig: ERS139927SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 293397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 128870-129290 bp Zoom in on locus 1 x7 CRISPR array Location: 128870-129290 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 128870-129290 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 128870-129290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKBY010000001.1 Clostridioides difficile strain LSHTM-81 genome assembly, contig: ERS139927SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 585039 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97931-98157 bp 2 Locus 2: 177943-187666 bp 3 Locus 3: 238876-249834 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97931-98157 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97931-98157 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177943-179052 bp Gene: cas14:cas14 Type: Type-V Location: 179205-180377 bp Gene: unk Type: unknown Location: 180405-180863 bp Gene: pfam01881:cas6 Type: other Location: 181177-181914 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181919-183385 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183405-184418 bp Gene: cd09693:cas5 Type: Type-I Location: 184434-185231 bp Gene: cd09641:cas3HD Type: Type-I Location: 185258-187666 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238876-239361 bp Gene: cd06127:DEDDh Type: Type-I Location: 246164-247210 bp Gene: unk Type: unknown Location: 247582-248088 bp Gene: unk Type: unknown Location: 248501-249169 bp Gene: cd06127:DEDDh Type: Type-I Location: 249328-249834 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97931-98157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKBY010000006.1 Clostridioides difficile strain LSHTM-81 genome assembly, contig: ERS139927SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 244588 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11624-14678 bp 2 Locus 2: 105528-106147 bp 3 Locus 3: 215407-215567 bp Zoom in on locus 1 x3 x4 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 11624-11784 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 11624-11784 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 14452-14678 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 14452-14678 bp Num of repeats: 4 Spacers: s3-s5 CRISPR array Location: 105528-106147 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 105528-106147 bp Num of repeats: 10 Spacers: s6-s14 CRISPR array Location: 215407-215567 bp Num of repeats: 3 Spacers: s15-s16 CRISPR array Location: 215407-215567 bp Num of repeats: 3 Spacers: s15-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 11624-11784 bp]: array | spacers
           [Locus range 14452-14678 bp]: array | spacers
           [Locus range 105528-106147 bp]: array | spacers
           [Locus range 215407-215567 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKBY010000002.1 Clostridioides difficile strain LSHTM-81 genome assembly, contig: ERS139927SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 377227 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 194180-194275 bp Zoom in on locus 1 x2 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 194180-194275 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 194180-194275 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)