CRISPRone

CRISPRone report for GCA_901006345.1_8140_6_88

♦ Seq 1: CAAKCA010000002.1 Clostridioides difficile strain LSHTM-88 genome assembly, contig: ERS139934SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 376462 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182400-182494 bp Zoom in on locus 1 x2 CRISPR array Location: 182400-182494 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182400-182494 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182400-182494 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKCA010000003.1 Clostridioides difficile strain LSHTM-88 genome assembly, contig: ERS139934SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 345095 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97931-98157 bp 2 Locus 2: 177944-187667 bp 3 Locus 3: 238877-249835 bp Zoom in on locus 1 x4 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97931-98157 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 97931-98157 bp Num of repeats: 4 Spacers: s1-s3 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 177944-179053 bp Gene: cas14:cas14 Type: Type-V Location: 179206-180378 bp Gene: unk Type: unknown Location: 180406-180864 bp Gene: pfam01881:cas6 Type: other Location: 181178-181915 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181920-183386 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183406-184419 bp Gene: cd09693:cas5 Type: Type-I Location: 184435-185232 bp Gene: cd09641:cas3HD Type: Type-I Location: 185259-187667 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 238877-239362 bp Gene: cd06127:DEDDh Type: Type-I Location: 246165-247211 bp Gene: unk Type: unknown Location: 247583-248089 bp Gene: unk Type: unknown Location: 248502-249170 bp Gene: cd06127:DEDDh Type: Type-I Location: 249329-249835 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97931-98157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKCA010000001.1 Clostridioides difficile strain LSHTM-88 genome assembly, contig: ERS139934SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 538500 bp; # of CRISPR array = 5; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164109-164528 bp 2 Locus 2: 305768-308822 bp 3 Locus 3: 399672-400291 bp 4 Locus 4: 509551-509711 bp Zoom in on locus 1 x7 Zoom in on locus 2 x3 x4 Zoom in on locus 3 x10 Zoom in on locus 4 x3 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164109-164528 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 305768-305928 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 305768-305928 bp Num of repeats: 3 Spacers: s7-s8 CRISPR array Location: 308596-308822 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 308596-308822 bp Num of repeats: 4 Spacers: s9-s11 CRISPR array Location: 399672-400291 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 399672-400291 bp Num of repeats: 10 Spacers: s12-s20 CRISPR array Location: 509551-509711 bp Num of repeats: 3 Spacers: s21-s22 CRISPR array Location: 509551-509711 bp Num of repeats: 3 Spacers: s21-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164109-164528 bp]: array | spacers
           [Locus range 305768-305928 bp]: array | spacers
           [Locus range 308596-308822 bp]: array | spacers
           [Locus range 399672-400291 bp]: array | spacers
           [Locus range 509551-509711 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)