CRISPRone

CRISPRone report for GCA_901006375.1_8140_6_8

♦ Seq 1: CAAKCB010000002.1 Clostridioides difficile strain LSHTM-8 genome assembly, contig: ERS139945SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 377196 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 182962-183056 bp Zoom in on locus 1 x2 CRISPR array Location: 182962-183056 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 182962-183056 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 182962-183056 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKCB010000003.1 Clostridioides difficile strain LSHTM-8 genome assembly, contig: ERS139945SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 333488 bp; # of CRISPR array = 1; # of cas gene = 10  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97943-98300 bp 2 Locus 2: 178086-187809 bp 3 Locus 3: 239019-249977 bp Zoom in on locus 1 x6 Zoom in on locus 2 Zoom in on locus 3 CRISPR array Location: 97943-98300 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 97943-98300 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178086-179195 bp Gene: cas14:cas14 Type: Type-V Location: 179348-180520 bp Gene: unk Type: unknown Location: 180548-181006 bp Gene: pfam01881:cas6 Type: other Location: 181320-182057 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 182062-183528 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183548-184561 bp Gene: cd09693:cas5 Type: Type-I Location: 184577-185374 bp Gene: cd09641:cas3HD Type: Type-I Location: 185401-187809 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 239019-239504 bp Gene: cd06127:DEDDh Type: Type-I Location: 246307-247353 bp Gene: unk Type: unknown Location: 247725-248231 bp Gene: unk Type: unknown Location: 248644-249312 bp Gene: cd06127:DEDDh Type: Type-I Location: 249471-249977 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97943-98300 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKCB010000001.1 Clostridioides difficile strain LSHTM-8 genome assembly, contig: ERS139945SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 473605 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 164104-164523 bp 2 Locus 2: 334708-335327 bp 3 Locus 3: 444587-444747 bp Zoom in on locus 1 x7 Zoom in on locus 2 x10 Zoom in on locus 3 x3 CRISPR array Location: 164104-164523 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 164104-164523 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 334708-335327 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 334708-335327 bp Num of repeats: 10 Spacers: s7-s15 CRISPR array Location: 444587-444747 bp Num of repeats: 3 Spacers: s16-s17 CRISPR array Location: 444587-444747 bp Num of repeats: 3 Spacers: s16-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 164104-164523 bp]: array | spacers
           [Locus range 334708-335327 bp]: array | spacers
           [Locus range 444587-444747 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)