CRISPRone

CRISPRone report for GCA_901006405.1_8140_6_93

♦ Seq 1: CAAKCF010000003.1 Clostridioides difficile strain LSHTM-93 genome assembly, contig: ERS139939SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 258340 bp; # of CRISPR array = 0; # of cas gene = 9  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 88680-97007 bp 2 Locus 2: 149484-160437 bp Zoom in on locus 1 Zoom in on locus 2 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 88680-89789 bp Gene: unk Type: unknown Location: 90242-90418 bp Gene: pfam01881:cas6 Type: other Location: 90519-91256 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 91261-92727 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 92746-93759 bp Gene: cd09693:cas5 Type: Type-I Location: 93775-94572 bp Gene: cd09641:cas3HD Type: Type-I Location: 94599-97007 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 149484-149969 bp Gene: cd06127:DEDDh Type: Type-I Location: 156784-157821 bp Gene: unk Type: unknown Location: 158185-158691 bp Gene: unk Type: unknown Location: 159104-159772 bp Gene: cd06127:DEDDh Type: Type-I Location: 159931-160437 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKCF010000001.1 Clostridioides difficile strain LSHTM-93 genome assembly, contig: ERS139939SCcontig000001, whole genome shotgun sequence

⇒Summary: seq-len = 428007 bp; # of CRISPR array = 2; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45811-46625 bp 2 Locus 2: 84127-96438 bp Zoom in on locus 1 x13 Zoom in on locus 2 x44 CRISPR array Location: 45811-46625 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 45811-46625 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG0640:csa3 Type: Subtype-I-A Location: 84127-84504 bp Gene: cd09718:cas1 Type: universal Location: 84516-86171 bp CRISPR array Location: 93573-96438 bp Num of repeats: 44 Spacers: s13-s55 CRISPR array Location: 93573-96438 bp Num of repeats: 44 Spacers: s13-s55 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 45811-46625 bp]: array | spacers
           [Locus range 93573-96438 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKCF010000002.1 Clostridioides difficile strain LSHTM-93 genome assembly, contig: ERS139939SCcontig000002, whole genome shotgun sequence

⇒Summary: seq-len = 293728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189041-189668 bp Zoom in on locus 1 x10 CRISPR array Location: 189041-189668 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 189041-189668 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189041-189668 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKCF010000018.1 Clostridioides difficile strain LSHTM-93 genome assembly, contig: ERS139939SCcontig000018, whole genome shotgun sequence

⇒Summary: seq-len = 75978 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1584-2733 bp Zoom in on locus 1 x18 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1584-2733 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1584-2733 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CAAKCF010000007.1 Clostridioides difficile strain LSHTM-93 genome assembly, contig: ERS139939SCcontig000007, whole genome shotgun sequence

⇒Summary: seq-len = 140720 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61732-73319 bp Zoom in on locus 1 x39 Gene: cd09725:cas2 Type: universal Location: 61732-62022 bp Gene: cd09722:cas1 Type: universal Location: 62233-63240 bp Gene: pfam01930:cas4 Type: Type-I Location: 63266-63760 bp CRISPR array Location: 63845-66377 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 63845-66377 bp Num of repeats: 39 Spacers: s1-s38 Gene: unk Type: unknown Location: 64468-64596 bp Gene: cd09641:cas3HD Type: Type-I Location: 66567-69125 bp Gene: cd09693:cas5 Type: Type-I Location: 69149-69889 bp Gene: pfam05107:cas7b Type: Type-I Location: 69891-70880 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 70873-72612 bp Gene: cd09652:cas6 Type: other Location: 72624-73319 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63845-66377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CAAKCF010000006.1 Clostridioides difficile strain LSHTM-93 genome assembly, contig: ERS139939SCcontig000006, whole genome shotgun sequence

⇒Summary: seq-len = 147189 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9816-21450 bp Zoom in on locus 1 x32 Gene: pfam13280:WYL Type: other Location: 9816-10769 bp Gene: pfam01881:cas6 Type: other Location: 10847-11584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11590-13440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13442-14356 bp Gene: cd09693:cas5 Type: Type-I Location: 14358-15059 bp Gene: COG1203:cas3 Type: Type-I Location: 15070-17391 bp Gene: pfam01930:cas4 Type: Type-I Location: 17406-17957 bp Gene: cd09722:cas1 Type: universal Location: 17960-18940 bp Gene: cd09725:cas2 Type: universal Location: 18943-19209 bp CRISPR array Location: 19393-21450 bp Num of repeats: 32 Spacers: s1-s31 CRISPR array Location: 19393-21450 bp Num of repeats: 32 Spacers: s1-s31 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 19393-21450 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)