CRISPRone

CRISPRone report for GCA_901212445.1_NZ_Bacteroides_fragilis_MC1

♦ Seq 1: CAAKNW010000081.1 Bacteroides fragilis isolate Bacteroides_fragilis_MC1 genome assembly, contig: gnlWUSMEFCGSSBBFRMC1_171, whole genome shotgun sequence

⇒Summary: seq-len = 23456 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21261-23426 bp Zoom in on locus 1 x6 Gene: cd09652:cas6 Type: other Location: 21261-21932 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 21944-22324 bp Gene: cd09722:cas1 Type: universal Location: 22317-22556 bp Gene: cd09725:cas2 Type: universal Location: 22559-22822 bp CRISPR array Location: 23073-23426 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 23073-23426 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 23073-23426 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CAAKNW010000105.1 Bacteroides fragilis isolate Bacteroides_fragilis_MC1 genome assembly, contig: gnlWUSMEFCGSSBBFRMC1_30, whole genome shotgun sequence

⇒Summary: seq-len = 42141 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27132-30742 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 27132-28031 bp Gene: unk Type: unknown Location: 28028-29293 bp Gene: unk Type: unknown Location: 29301-30071 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 30074-30742 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CAAKNW010000152.1 Bacteroides fragilis isolate Bacteroides_fragilis_MC1 genome assembly, contig: gnlWUSMEFCGSSBBFRMC1_73, whole genome shotgun sequence

⇒Summary: seq-len = 64752 bp; # of CRISPR array = 1; # of cas gene = 3  (type II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56855-56900 bp Zoom in on locus 1 x2 antiRepeat Location: 56855-56900 bp Strand: + Match length: 26 bp Mismatch: 21 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 56968-61278 bp Gene: unk Type: unknown Location: 61294-61818 bp Gene: unk Type: unknown Location: 61885-62193 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 62313-63245 bp Gene: pfam09827:cas2 Type: Subtype-II-C Location: 63249-63581 bp CRISPR array Location: 64209-56900 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 64209-56900 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64209-56900 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CAAKNW010000179.1 Bacteroides fragilis isolate Bacteroides_fragilis_MC1 genome assembly, contig: gnlWUSMEFCGSSBBFRMC1_98, whole genome shotgun sequence

⇒Summary: seq-len = 32124 bp; # of CRISPR array = 0; # of cas gene = 3  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14633-24762 bp Zoom in on locus 1 Gene: cd09710:cas3 Type: Subtype-I-D Location: 14633-20773 bp Gene: pfam13280:WYL Type: other Location: 20812-21822 bp Gene: unk Type: unknown Location: 22588-22764 bp Gene: mkCas0123:csx19 Type: Subtype-III-D Location: 23101-24762 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)