CRISPRone

CRISPRone report for GCA_901482625.1_45296_D02

♦ Seq 1: CABEEW010000038.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000038, whole genome shotgun sequence

⇒Summary: seq-len = 121152 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48155-48910 bp Zoom in on locus 1 x12 CRISPR array Location: 48155-48910 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 48155-48910 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48155-48910 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CABEEW010000040.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000040, whole genome shotgun sequence

⇒Summary: seq-len = 136412 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99353-110229 bp Zoom in on locus 1 x21 CRISPR array Location: 99353-100691 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 99353-100691 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09725:cas2 Type: universal Location: 100875-101141 bp Gene: cd09722:cas1 Type: universal Location: 101144-102124 bp Gene: pfam01930:cas4 Type: Type-I Location: 102127-102645 bp Gene: COG1203:cas3 Type: Type-I Location: 102693-105014 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 105025-105726 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 105728-106642 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 106644-108494 bp Gene: pfam01881:cas6 Type: other Location: 108500-109294 bp Gene: pfam13280:WYL Type: other Location: 109315-110229 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 99353-100691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CABEEW010000023.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000023, whole genome shotgun sequence

⇒Summary: seq-len = 73039 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63774-63869 bp Zoom in on locus 1 x2 CRISPR array Location: 63774-63869 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 63774-63869 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63774-63869 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CABEEW010000059.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000059, whole genome shotgun sequence

⇒Summary: seq-len = 188346 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 119016-126881 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 119016-121424 bp Gene: cd09693:cas5 Type: Type-I Location: 121451-122248 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 122264-123277 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 123297-124772 bp Gene: pfam01881:cas6 Type: other Location: 124777-125514 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 125772-126881 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CABEEW010000031.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000031, whole genome shotgun sequence

⇒Summary: seq-len = 42538 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3128-3619 bp Zoom in on locus 1 x8 CRISPR array Location: 3128-3619 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3128-3619 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3128-3619 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CABEEW010000011.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000011, whole genome shotgun sequence

⇒Summary: seq-len = 315149 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 311498-311789 bp Zoom in on locus 1 x5 CRISPR array Location: 311498-311789 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 311498-311789 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 311498-311789 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CABEEW010000029.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000029, whole genome shotgun sequence

⇒Summary: seq-len = 43042 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4121-4349 bp Zoom in on locus 1 x4 CRISPR array Location: 4121-4349 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 4121-4349 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4121-4349 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: CABEEW010000062.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000062, whole genome shotgun sequence

⇒Summary: seq-len = 75744 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68929-70534 bp Zoom in on locus 1 x25 CRISPR array Location: 68929-70534 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 68929-70534 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 68929-70534 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: CABEEW010000024.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000024, whole genome shotgun sequence

⇒Summary: seq-len = 544189 bp; # of CRISPR array = 0; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 180261-186422 bp Zoom in on locus 1 Gene: COG2378:WYL Type: other Location: 180261-181253 bp Gene: COG2378:WYL Type: other Location: 181253-182224 bp Gene: unk Type: unknown Location: 182332-182604 bp Gene: unk Type: unknown Location: 182698-183618 bp Gene: cd09639:cas3 Type: Type-I Location: 183708-186422 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: CABEEW010000061.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000061, whole genome shotgun sequence

⇒Summary: seq-len = 147921 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 124434-125387 bp Zoom in on locus 1 x15 CRISPR array Location: 124434-125387 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 124434-125387 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 124434-125387 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: CABEEW010000016.1 Clostridioides difficile strain NCTC13750 genome assembly, contig: ERS1092512SCcontig000016, whole genome shotgun sequence

⇒Summary: seq-len = 78883 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34993-35284 bp Zoom in on locus 1 x5 CRISPR array Location: 34993-35284 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 34993-35284 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34993-35284 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)