CRISPRone

CRISPRone report for GCA_901523085.1_45232_E01

♦ Seq 1: CABEGL010000003.1 Clostridioides difficile strain NCTC13746 genome assembly, contig: ERS1092507SCcontig000003, whole genome shotgun sequence

⇒Summary: seq-len = 4065230 bp; # of CRISPR array = 8; # of cas gene = 14  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1352969-1353196 bp 2 Locus 2: 1561338-1561759 bp 3 Locus 3: 1675397-1675624 bp 4 Locus 4: 1850978-1851339 bp 5 Locus 5: 2169212-2169373 bp 6 Locus 6: 2324828-2336555 bp 7 Locus 7: 2526058-2526743 bp 8 Locus 8: 2688711-2696576 bp 9 Locus 9: 2769824-2770381 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 Zoom in on locus 3 x4 Zoom in on locus 4 x6 Zoom in on locus 5 x3 Zoom in on locus 6 x41 Zoom in on locus 7 x11 Zoom in on locus 8 Zoom in on locus 9 x9 CRISPR array Location: 1352969-1353196 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1352969-1353196 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1561338-1561759 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 1561338-1561759 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 1675397-1675624 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 1675397-1675624 bp Num of repeats: 4 Spacers: s10-s12 CRISPR array Location: 1850978-1851339 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 1850978-1851339 bp Num of repeats: 6 Spacers: s13-s17 CRISPR array Location: 2169212-2169373 bp Num of repeats: 3 Spacers: s18-s19 CRISPR array Location: 2169212-2169373 bp Num of repeats: 3 Spacers: s18-s19 Gene: cd09725:cas2 Type: universal Location: 2324828-2325118 bp Gene: cd09722:cas1 Type: universal Location: 2325329-2326336 bp Gene: pfam01930:cas4 Type: Type-I Location: 2326362-2326856 bp CRISPR array Location: 2326941-2329613 bp Num of repeats: 41 Spacers: s20-s59 CRISPR array Location: 2326941-2329613 bp Num of repeats: 41 Spacers: s20-s59 Gene: cd09641:cas3HD Type: Type-I Location: 2329803-2332361 bp Gene: cd09693:cas5 Type: Type-I Location: 2332385-2333125 bp Gene: pfam05107:cas7b Type: Type-I Location: 2333127-2334116 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2334109-2335848 bp Gene: cd09652:cas6 Type: other Location: 2335860-2336555 bp CRISPR array Location: 2526058-2526743 bp Num of repeats: 11 Spacers: s60-s69 CRISPR array Location: 2526058-2526743 bp Num of repeats: 11 Spacers: s60-s69 Gene: cd09641:cas3HD Type: Type-I Location: 2688711-2691119 bp Gene: cd09693:cas5 Type: Type-I Location: 2691146-2691943 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2691959-2692972 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2692992-2694467 bp Gene: pfam01881:cas6 Type: other Location: 2694472-2695209 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 2695467-2696576 bp CRISPR array Location: 2769824-2770381 bp Num of repeats: 9 Spacers: s70-s77 CRISPR array Location: 2769824-2770381 bp Num of repeats: 9 Spacers: s70-s77 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1352969-1353196 bp]: array | spacers
           [Locus range 1561338-1561759 bp]: array | spacers
           [Locus range 1675397-1675624 bp]: array | spacers
           [Locus range 1850978-1851339 bp]: array | spacers
           [Locus range 2169212-2169373 bp]: array | spacers
           [Locus range 2326941-2329613 bp]: array | spacers
           [Locus range 2526058-2526743 bp]: array | spacers
           [Locus range 2769824-2770381 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)