CRISPRone

CRISPRone report for GCA_902204145.1_BS3413

♦ Seq 1: CABITO010000027.1 Pseudomonas aeruginosa isolate BS3413 genome assembly, contig: scaffold27.1, whole genome shotgun sequence

⇒Summary: seq-len = 69285 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21079-31988 bp Zoom in on locus 1 x23 x17 CRISPR array Location: 21079-22427 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 21079-22427 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 22678-23652 bp Gene: COG1203:cas3 Type: Type-I Location: 23649-26879 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26937-28241 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28228-29211 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29222-30250 bp Gene: cd09739:cas6f Type: other Location: 30254-30817 bp CRISPR array Location: 31001-31988 bp Num of repeats: 17 Spacers: s23-s38 CRISPR array Location: 31001-31988 bp Num of repeats: 17 Spacers: s23-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21079-22427 bp]: array | spacers
           [Locus range 31001-31988 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CABITO010000001.1 Pseudomonas aeruginosa isolate BS3413 genome assembly, contig: scaffold1.1, whole genome shotgun sequence

⇒Summary: seq-len = 641293 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92401-92848 bp Zoom in on locus 1 x8 CRISPR array Location: 92401-92848 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 92401-92848 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92401-92848 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CABITO010000032.1 Pseudomonas aeruginosa isolate BS3413 genome assembly, contig: scaffold32.1, whole genome shotgun sequence

⇒Summary: seq-len = 50644 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 264-8354 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 264-1280 bp Gene: unk Type: unknown Location: 2244-2483 bp Gene: unk Type: unknown Location: 2552-2731 bp Gene: unk Type: unknown Location: 3041-3574 bp Gene: pfam13280:WYL Type: other Location: 3589-4464 bp Gene: unk Type: unknown Location: 4514-4882 bp Gene: unk Type: unknown Location: 4948-5595 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 5988-8354 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)