CRISPRone

CRISPRone report for GCA_902386425.1_UHGG_MGYG-HGUT-02370

♦ Seq 1: CABMIX010000038.1 Clostridioides difficile isolate MGYG-HGUT-02370 genome assembly, contig: GUT_GENOME142388_38, whole genome shotgun sequence

⇒Summary: seq-len = 385267 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 296086-298139 bp Zoom in on locus 1 Gene: cd09718:cas1 Type: universal Location: 296086-297741 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 297753-298139 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CABMIX010000042.1 Clostridioides difficile isolate MGYG-HGUT-02370 genome assembly, contig: GUT_GENOME142388_42, whole genome shotgun sequence

⇒Summary: seq-len = 54955 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8102-14932 bp Zoom in on locus 1 x30 x3 x12 x6 CRISPR array Location: 8102-10032 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 8102-10032 bp Num of repeats: 30 Spacers: s1-s29 CRISPR array Location: 11766-11926 bp Num of repeats: 3 Spacers: s30-s31 CRISPR array Location: 11766-11926 bp Num of repeats: 3 Spacers: s30-s31 CRISPR array Location: 11964-12712 bp Num of repeats: 12 Spacers: s32-s42 CRISPR array Location: 11964-12712 bp Num of repeats: 12 Spacers: s32-s42 CRISPR array Location: 14578-14932 bp Num of repeats: 6 Spacers: s43-s47 CRISPR array Location: 14578-14932 bp Num of repeats: 6 Spacers: s43-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8102-10032 bp]: array | spacers
           [Locus range 11766-11926 bp]: array | spacers
           [Locus range 11964-12712 bp]: array | spacers
           [Locus range 14578-14932 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CABMIX010000047.1 Clostridioides difficile isolate MGYG-HGUT-02370 genome assembly, contig: GUT_GENOME142388_47, whole genome shotgun sequence

⇒Summary: seq-len = 309409 bp; # of CRISPR array = 3; # of cas gene = 16  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 104805-126139 bp 2 Locus 2: 255425-264634 bp Zoom in on locus 1 x20 Zoom in on locus 2 x18 x12 CRISPR array Location: 104805-106074 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 104805-106074 bp Num of repeats: 20 Spacers: s1-s19 Gene: cd09725:cas2 Type: universal Location: 106258-106524 bp Gene: cd09722:cas1 Type: universal Location: 106528-107508 bp Gene: pfam01930:cas4 Type: Type-I Location: 107511-108029 bp Gene: COG1203:cas3 Type: Type-I Location: 108077-110404 bp Gene: cd09693:cas5 Type: Type-I Location: 110408-111109 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 111111-112025 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 112027-113859 bp Gene: pfam01881:cas6 Type: other Location: 113904-114641 bp Gene: pfam13280:WYL Type: other Location: 114719-115672 bp Gene: COG2378:WYL Type: other Location: 125240-126139 bp Gene: COG2378:WYL Type: other Location: 255425-256387 bp CRISPR array Location: 256725-257873 bp Num of repeats: 18 Spacers: s20-s36 CRISPR array Location: 256725-257873 bp Num of repeats: 18 Spacers: s20-s36 Gene: unk Type: unknown Location: 257011-257451 bp CRISPR array Location: 257972-258725 bp Num of repeats: 12 Spacers: s37-s47 CRISPR array Location: 257972-258725 bp Num of repeats: 12 Spacers: s37-s47 Gene: unk Type: unknown Location: 258710-258841 bp Gene: COG1203:cas3 Type: Type-I Location: 258977-260962 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 260973-262043 bp Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 262064-263230 bp Gene: pfam01881:cas6 Type: other Location: 263232-263996 bp Gene: cd09693:cas5 Type: Type-I Location: 263987-264634 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 104805-106074 bp]: array | spacers
           [Locus range 256725-257873 bp]: array | spacers
           [Locus range 257972-258725 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CABMIX010000036.1 Clostridioides difficile isolate MGYG-HGUT-02370 genome assembly, contig: GUT_GENOME142388_36, whole genome shotgun sequence

⇒Summary: seq-len = 57640 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55457-55943 bp Zoom in on locus 1 x8 CRISPR array Location: 55457-55943 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 55457-55943 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 55457-55943 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)