CRISPRone

CRISPRone report for GCA_902633005.1_BS3357

♦ Seq 1: CACPEM010000019.1 Pseudomonas aeruginosa strain 234 genome assembly, contig: scaffold19.1, whole genome shotgun sequence

⇒Summary: seq-len = 69713 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22115-33982 bp Zoom in on locus 1 x23 x27 CRISPR array Location: 22115-23464 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 22115-23464 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09718:cas1 Type: universal Location: 23724-24698 bp Gene: COG1203:cas3 Type: Type-I Location: 24695-27925 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28336-29637 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29624-30607 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30618-31646 bp Gene: cd09739:cas6f Type: other Location: 31650-32213 bp CRISPR array Location: 32398-33982 bp Num of repeats: 27 Spacers: s23-s48 CRISPR array Location: 32398-33982 bp Num of repeats: 27 Spacers: s23-s48 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22115-23464 bp]: array | spacers
           [Locus range 32398-33982 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CACPEM010000001.1 Pseudomonas aeruginosa strain 234 genome assembly, contig: scaffold1.1, whole genome shotgun sequence

⇒Summary: seq-len = 870058 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 209738-210366 bp Zoom in on locus 1 x11 CRISPR array Location: 209738-210366 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 209738-210366 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 209738-210366 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)