CRISPRone

CRISPRone report for GCA_902633045.1_BS3353

♦ Seq 1: CACPEO010000020.1 Pseudomonas aeruginosa strain 223 genome assembly, contig: scaffold20.1, whole genome shotgun sequence

⇒Summary: seq-len = 72184 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22115-33922 bp Zoom in on locus 1 x22 x27 CRISPR array Location: 22115-23404 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 22115-23404 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 23664-24638 bp Gene: COG1203:cas3 Type: Type-I Location: 24635-27865 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28276-29577 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29564-30547 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30558-31586 bp Gene: cd09739:cas6f Type: other Location: 31590-32153 bp CRISPR array Location: 32338-33922 bp Num of repeats: 27 Spacers: s22-s47 CRISPR array Location: 32338-33922 bp Num of repeats: 27 Spacers: s22-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22115-23404 bp]: array | spacers
           [Locus range 32338-33922 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CACPEO010000004.1 Pseudomonas aeruginosa strain 223 genome assembly, contig: scaffold4.1, whole genome shotgun sequence

⇒Summary: seq-len = 503499 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 495912-496481 bp Zoom in on locus 1 x10 CRISPR array Location: 495912-496481 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 495912-496481 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 495912-496481 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)