CRISPRone

CRISPRone report for GCA_902633075.1_BS3352

♦ Seq 1: CACPES010000001.1 Pseudomonas aeruginosa strain 223 genome assembly, contig: scaffold1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1590972 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 957249-957817 bp Zoom in on locus 1 x10 CRISPR array Location: 957249-957817 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 957249-957817 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 957249-957817 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CACPES010000016.1 Pseudomonas aeruginosa strain 223 genome assembly, contig: scaffold16.1, whole genome shotgun sequence

⇒Summary: seq-len = 72170 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 22101-33908 bp Zoom in on locus 1 x22 x27 CRISPR array Location: 22101-23390 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 22101-23390 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 23650-24624 bp Gene: COG1203:cas3 Type: Type-I Location: 24621-27851 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 28262-29563 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 29550-30533 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 30544-31572 bp Gene: cd09739:cas6f Type: other Location: 31576-32139 bp CRISPR array Location: 32324-33908 bp Num of repeats: 27 Spacers: s22-s47 CRISPR array Location: 32324-33908 bp Num of repeats: 27 Spacers: s22-s47 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 22101-23390 bp]: array | spacers
           [Locus range 32324-33908 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)