CRISPRone

CRISPRone report for GCA_902806655.1_HON10

♦ Seq 1: CADCXJ010000008.1 Clostridioides difficile isolate HON10 genome assembly, contig: NGIMFJHL_8, whole genome shotgun sequence

⇒Summary: seq-len = 186032 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69164-75696 bp Zoom in on locus 1 x10 CRISPR array Location: 69164-69786 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69164-69786 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70039-72024 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72035-73105 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73126-74292 bp Gene: pfam01881:cas6 Type: other Location: 74294-75058 bp Gene: cd09693:cas5 Type: Type-I Location: 75049-75696 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69164-69786 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CADCXJ010000009.1 Clostridioides difficile isolate HON10 genome assembly, contig: NGIMFJHL_9, whole genome shotgun sequence

⇒Summary: seq-len = 168879 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 141306-152421 bp Zoom in on locus 1 x24 CRISPR array Location: 141306-142856 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 141306-142856 bp Num of repeats: 24 Spacers: s1-s23 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 142152-142385 bp Gene: unk Type: unknown Location: 142607-142774 bp Gene: cd09725:cas2 Type: universal Location: 143040-143306 bp Gene: cd09722:cas1 Type: universal Location: 143309-144289 bp Gene: pfam01930:cas4 Type: Type-I Location: 144292-144810 bp Gene: COG1203:cas3 Type: Type-I Location: 144858-147179 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 147190-147891 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 147893-148807 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 148809-150686 bp Gene: pfam01881:cas6 Type: other Location: 150692-151486 bp Gene: pfam13280:WYL Type: other Location: 151507-152421 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 141306-142856 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CADCXJ010000012.1 Clostridioides difficile isolate HON10 genome assembly, contig: NGIMFJHL_12, whole genome shotgun sequence

⇒Summary: seq-len = 149031 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23237-25747 bp 2 Locus 2: 118131-118424 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23237-23526 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23237-23526 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25391-25747 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25391-25747 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118131-118424 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118131-118424 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23237-23526 bp]: array | spacers
           [Locus range 25391-25747 bp]: array | spacers
           [Locus range 118131-118424 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CADCXJ010000028.1 Clostridioides difficile isolate HON10 genome assembly, contig: NGIMFJHL_28, whole genome shotgun sequence

⇒Summary: seq-len = 31618 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30081-30901 bp Zoom in on locus 1 x13 CRISPR array Location: 30081-30901 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 30081-30901 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30081-30901 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CADCXJ010000001.1 Clostridioides difficile isolate HON10 genome assembly, contig: NGIMFJHL_1, whole genome shotgun sequence

⇒Summary: seq-len = 497993 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112225-113310 bp 2 Locus 2: 421824-421918 bp 3 Locus 3: 463539-464164 bp Zoom in on locus 1 x17 Zoom in on locus 2 x2 Zoom in on locus 3 x10 CRISPR array Location: 112225-113310 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 112225-113310 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 421824-421918 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 421824-421918 bp Num of repeats: 2 Spacers: s17-s17 CRISPR array Location: 463539-464164 bp Num of repeats: 10 Spacers: s18-s26 CRISPR array Location: 463539-464164 bp Num of repeats: 10 Spacers: s18-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112225-113310 bp]: array | spacers
           [Locus range 421824-421918 bp]: array | spacers
           [Locus range 463539-464164 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CADCXJ010000004.1 Clostridioides difficile isolate HON10 genome assembly, contig: NGIMFJHL_4, whole genome shotgun sequence

⇒Summary: seq-len = 257278 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78289-78975 bp Zoom in on locus 1 x11 CRISPR array Location: 78289-78975 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78289-78975 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78289-78975 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: CADCXJ010000003.1 Clostridioides difficile isolate HON10 genome assembly, contig: NGIMFJHL_3, whole genome shotgun sequence

⇒Summary: seq-len = 258455 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45012-52887 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45012-47420 bp Gene: cd09693:cas5 Type: Type-I Location: 47447-48253 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48269-49282 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49302-50777 bp Gene: pfam01881:cas6 Type: other Location: 50782-51519 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51778-52887 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)