CRISPRone

CRISPRone report for GCA_902806665.1_HON06

♦ Seq 1: CADCXL010000008.1 Clostridioides difficile isolate HON06 genome assembly, contig: OJEFHGPC_8, whole genome shotgun sequence

⇒Summary: seq-len = 149134 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 23237-25747 bp 2 Locus 2: 118131-118424 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 23237-23526 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 23237-23526 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 25391-25747 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 25391-25747 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 118131-118424 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 118131-118424 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 23237-23526 bp]: array | spacers
           [Locus range 25391-25747 bp]: array | spacers
           [Locus range 118131-118424 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CADCXL010000006.1 Clostridioides difficile isolate HON06 genome assembly, contig: OJEFHGPC_6, whole genome shotgun sequence

⇒Summary: seq-len = 186180 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 110435-116968 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 110435-111082 bp Gene: pfam01881:cas6 Type: other Location: 111073-111837 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 111839-113005 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 113026-114096 bp Gene: COG1203:cas3 Type: Type-I Location: 114107-116092 bp CRISPR array Location: 116345-116968 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 116345-116968 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 116345-116968 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CADCXL010000002.1 Clostridioides difficile isolate HON06 genome assembly, contig: OJEFHGPC_2, whole genome shotgun sequence

⇒Summary: seq-len = 366622 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45012-52887 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 45012-47420 bp Gene: cd09693:cas5 Type: Type-I Location: 47447-48253 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48269-49282 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49302-50777 bp Gene: pfam01881:cas6 Type: other Location: 50782-51519 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51778-52887 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CADCXL010000003.1 Clostridioides difficile isolate HON06 genome assembly, contig: OJEFHGPC_3, whole genome shotgun sequence

⇒Summary: seq-len = 289038 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78289-78975 bp 2 Locus 2: 287364-288321 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78289-78975 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78289-78975 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287364-288321 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287364-288321 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78289-78975 bp]: array | spacers
           [Locus range 287364-288321 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CADCXL010000001.1 Clostridioides difficile isolate HON06 genome assembly, contig: OJEFHGPC_1, whole genome shotgun sequence

⇒Summary: seq-len = 772690 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112330-113154 bp 2 Locus 2: 421303-421397 bp 3 Locus 3: 472755-473380 bp Zoom in on locus 1 x13 Zoom in on locus 2 x2 Zoom in on locus 3 x10 CRISPR array Location: 112330-113154 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112330-113154 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 421303-421397 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 421303-421397 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 472755-473380 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 472755-473380 bp Num of repeats: 10 Spacers: s14-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112330-113154 bp]: array | spacers
           [Locus range 421303-421397 bp]: array | spacers
           [Locus range 472755-473380 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CADCXL010000009.1 Clostridioides difficile isolate HON06 genome assembly, contig: OJEFHGPC_9, whole genome shotgun sequence

⇒Summary: seq-len = 148862 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121223-132405 bp Zoom in on locus 1 x25 CRISPR array Location: 121223-122840 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 121223-122840 bp Num of repeats: 25 Spacers: s1-s24 Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 122069-122302 bp Gene: unk Type: unknown Location: 122524-122691 bp Gene: cd09725:cas2 Type: universal Location: 123024-123290 bp Gene: cd09722:cas1 Type: universal Location: 123293-124273 bp Gene: pfam01930:cas4 Type: Type-I Location: 124276-124794 bp Gene: COG1203:cas3 Type: Type-I Location: 124842-127163 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 127174-127875 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 127877-128791 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 128793-130670 bp Gene: pfam01881:cas6 Type: other Location: 130676-131470 bp Gene: pfam13280:WYL Type: other Location: 131491-132405 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 121223-122840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)