CRISPRone

CRISPRone report for GCA_902806675.1_DF11

♦ Seq 1: CADCXI010000002.1 Clostridioides difficile isolate DF11 genome assembly, contig: CKOKGAKF_2, whole genome shotgun sequence

⇒Summary: seq-len = 380391 bp; # of CRISPR array = 1; # of cas gene = 15  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45012-52887 bp 2 Locus 2: 352951-363934 bp Zoom in on locus 1 Zoom in on locus 2 x22 Gene: cd09641:cas3HD Type: Type-I Location: 45012-47420 bp Gene: cd09693:cas5 Type: Type-I Location: 47447-48253 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 48269-49282 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 49302-50777 bp Gene: pfam01881:cas6 Type: other Location: 50782-51519 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 51778-52887 bp CRISPR array Location: 352951-354369 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 352951-354369 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 354553-354819 bp Gene: cd09722:cas1 Type: universal Location: 354822-355802 bp Gene: pfam01930:cas4 Type: Type-I Location: 355805-356323 bp Gene: COG1203:cas3 Type: Type-I Location: 356371-358692 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 358703-359404 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 359406-360320 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 360322-362199 bp Gene: pfam01881:cas6 Type: other Location: 362205-362999 bp Gene: pfam13280:WYL Type: other Location: 363020-363934 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 352951-354369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CADCXI010000001.1 Clostridioides difficile isolate DF11 genome assembly, contig: CKOKGAKF_1, whole genome shotgun sequence

⇒Summary: seq-len = 772437 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 299309-299935 bp 2 Locus 2: 341555-341650 bp 3 Locus 3: 659129-660213 bp Zoom in on locus 1 x10 Zoom in on locus 2 x2 Zoom in on locus 3 x17 CRISPR array Location: 299309-299935 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 299309-299935 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 341555-341650 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 341555-341650 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 659129-660213 bp Num of repeats: 17 Spacers: s11-s26 CRISPR array Location: 659129-660213 bp Num of repeats: 17 Spacers: s11-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 299309-299935 bp]: array | spacers
           [Locus range 341555-341650 bp]: array | spacers
           [Locus range 659129-660213 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CADCXI010000015.1 Clostridioides difficile isolate DF11 genome assembly, contig: CKOKGAKF_15, whole genome shotgun sequence

⇒Summary: seq-len = 109695 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78795-79088 bp Zoom in on locus 1 x5 CRISPR array Location: 78795-79088 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 78795-79088 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78795-79088 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CADCXI010000025.1 Clostridioides difficile isolate DF11 genome assembly, contig: CKOKGAKF_25, whole genome shotgun sequence

⇒Summary: seq-len = 16101 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7052-9562 bp Zoom in on locus 1 x5 x6 CRISPR array Location: 7052-7341 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7052-7341 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 9206-9562 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 9206-9562 bp Num of repeats: 6 Spacers: s5-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7052-7341 bp]: array | spacers
           [Locus range 9206-9562 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CADCXI010000003.1 Clostridioides difficile isolate DF11 genome assembly, contig: CKOKGAKF_3, whole genome shotgun sequence

⇒Summary: seq-len = 289034 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 78289-78975 bp 2 Locus 2: 287364-288317 bp Zoom in on locus 1 x11 Zoom in on locus 2 x15 CRISPR array Location: 78289-78975 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 78289-78975 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 287364-288317 bp Num of repeats: 15 Spacers: s11-s24 CRISPR array Location: 287364-288317 bp Num of repeats: 15 Spacers: s11-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 78289-78975 bp]: array | spacers
           [Locus range 287364-288317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CADCXI010000008.1 Clostridioides difficile isolate DF11 genome assembly, contig: CKOKGAKF_8, whole genome shotgun sequence

⇒Summary: seq-len = 186108 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69163-75695 bp Zoom in on locus 1 x10 CRISPR array Location: 69163-69785 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 69163-69785 bp Num of repeats: 10 Spacers: s1-s9 Gene: COG1203:cas3 Type: Type-I Location: 70038-72023 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 72034-73104 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 73125-74291 bp Gene: pfam01881:cas6 Type: other Location: 74293-75057 bp Gene: cd09693:cas5 Type: Type-I Location: 75048-75695 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69163-69785 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)