CRISPRone

CRISPRone report for GCA_902806705.1_HON11

♦ Seq 1: CADCXK010000008.1 Clostridioides difficile isolate HON11 genome assembly, contig: GFLMEGDM_8, whole genome shotgun sequence

⇒Summary: seq-len = 149030 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 30607-30901 bp 2 Locus 2: 123284-125795 bp Zoom in on locus 1 x5 Zoom in on locus 2 x6 x5 CRISPR array Location: 30607-30901 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 30607-30901 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 123284-123641 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 123284-123641 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 125505-125795 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 125505-125795 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 30607-30901 bp]: array | spacers
           [Locus range 123284-123641 bp]: array | spacers
           [Locus range 125505-125795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: CADCXK010000002.1 Clostridioides difficile isolate HON11 genome assembly, contig: GFLMEGDM_2, whole genome shotgun sequence

⇒Summary: seq-len = 424566 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 348820-355353 bp Zoom in on locus 1 x10 Gene: cd09693:cas5 Type: Type-I Location: 348820-349467 bp Gene: pfam01881:cas6 Type: other Location: 349458-350222 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 350224-351390 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 351411-352481 bp Gene: COG1203:cas3 Type: Type-I Location: 352492-354477 bp CRISPR array Location: 354730-355353 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 354730-355353 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 354730-355353 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: CADCXK010000003.1 Clostridioides difficile isolate HON11 genome assembly, contig: GFLMEGDM_3, whole genome shotgun sequence

⇒Summary: seq-len = 406446 bp; # of CRISPR array = 1; # of cas gene = 3  (type III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16434-20447 bp 2 Locus 2: 96395-97081 bp Zoom in on locus 1 Zoom in on locus 2 x11 Gene: cas14:cas14 Type: Type-V Location: 16434-17552 bp Gene: COG2378:WYL Type: other Location: 18191-19102 bp Gene: unk Type: unknown Location: 19213-19680 bp Gene: mkCas0136:csm2gr11 Type: Subtype-III-A Location: 19848-20447 bp CRISPR array Location: 96395-97081 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 96395-97081 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 96395-97081 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: CADCXK010000001.1 Clostridioides difficile isolate HON11 genome assembly, contig: GFLMEGDM_1, whole genome shotgun sequence

⇒Summary: seq-len = 887280 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112226-113050 bp 2 Locus 2: 421199-421293 bp 3 Locus 3: 472651-473276 bp Zoom in on locus 1 x13 Zoom in on locus 2 x2 Zoom in on locus 3 x10 CRISPR array Location: 112226-113050 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 112226-113050 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 421199-421293 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 421199-421293 bp Num of repeats: 2 Spacers: s13-s13 CRISPR array Location: 472651-473276 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 472651-473276 bp Num of repeats: 10 Spacers: s14-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112226-113050 bp]: array | spacers
           [Locus range 421199-421293 bp]: array | spacers
           [Locus range 472651-473276 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: CADCXK010000005.1 Clostridioides difficile isolate HON11 genome assembly, contig: GFLMEGDM_5, whole genome shotgun sequence

⇒Summary: seq-len = 221926 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 169040-176915 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 169040-170149 bp Gene: pfam01881:cas6 Type: other Location: 170408-171145 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 171150-172625 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 172645-173658 bp Gene: cd09693:cas5 Type: Type-I Location: 173674-174480 bp Gene: cd09641:cas3HD Type: Type-I Location: 174507-176915 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: CADCXK010000009.1 Clostridioides difficile isolate HON11 genome assembly, contig: GFLMEGDM_9, whole genome shotgun sequence

⇒Summary: seq-len = 140940 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16486-26795 bp Zoom in on locus 1 x25 Gene: pfam13280:WYL Type: other Location: 16486-17373 bp Gene: pfam01881:cas6 Type: other Location: 17451-18188 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 18194-20071 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20073-20987 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 20989-21690 bp Gene: COG1203:cas3 Type: Type-I Location: 21701-24022 bp Gene: pfam01930:cas4 Type: Type-I Location: 24037-24588 bp Gene: cd09722:cas1 Type: universal Location: 24591-25571 bp Gene: cd09725:cas2 Type: universal Location: 25574-25840 bp CRISPR array Location: 26024-27642 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 26024-27642 bp Num of repeats: 25 Spacers: s1-s24 Gene: unk Type: unknown Location: 26173-26340 bp Gene: cls000290:cas8a3 Type: Subtype-I-A Location: 26562-26795 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26024-27642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)